PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0118200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 289aa MW: 29448.6 Da PI: 6.761

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0118200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.2	5.5e-36	31	85	5	59
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 a +cprC s+ntkfCyynny+l+qPr+fCkaCrryWt GG+lrnvPvGg++r+ Spipo2G0118200 31 AERCPRCGSQNTKFCYYNNYNLAQPRHFCKACRRYWTVGGSLRNVPVGGSTRRPA 85 679*************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-21	30	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.4E-31	31	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.587	32	86	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	34	70	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MKGSMRVSSS SDGGERRVAA GAEPLACGGE AERCPRCGSQ NTKFCYYNNY NLAQPRHFCK 60 ACRRYWTVGG SLRNVPVGGS TRRPAAPHQS KPQISPDHPI TSPAKPLRRR PAPALASAAS 120 SPSSSCSSSP PLGSLASVSA PAAPSVAKFE ADGSDEPGGP IDAVRCFESL LGEPLPAGFL 180 ALGDPFLGGH DGFALGLGLG GHGGAAADIV DEMSFGSERG ASAWPFFEDD GGAIVGGGNN 240 AGTSDRIGGE HDAWRAVAGE SELVRGDGGE YCGWPDPAAP ATRGKRVQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004791	9e-31	AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBank	AP014962	9e-31	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	5e-28	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Spipo2G0118200