PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0108900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 281aa    MW: 30928.9 Da    PI: 8.5802
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0108900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-18127181256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Spipo2G0108900 127 RKKLRLTKEQSTLLEERFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 181
                     788899***********************************************98 PP
2HD-ZIP_I/II123.97.6e-40127216191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eL+ +l
  Spipo2G0108900 127 RKKLRLTKEQSTLLEERFKEHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELK-AL 216
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.54123183IPR001356Homeobox domain
SuperFamilySSF466896.68E-18123184IPR009057Homeodomain-like
SMARTSM003893.6E-15125187IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-17127181IPR009057Homeodomain-like
CDDcd000861.85E-16127184No hitNo description
PfamPF000464.4E-16127181IPR001356Homeobox domain
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
SMARTSM003401.0E-25183226IPR003106Leucine zipper, homeobox-associated
PfamPF021837.5E-11183217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGVGDSNWDT GLVLGLGYEA WATVPPAADS YRKRDSGVKL ELREAVSGQI AAEPSLTLSL  60
SDGSYQRTTV TQDPRSVRQS PPLSVVSSFS NAFPSSSVKK EKDAVSEEEE AERVSSRASD  120
EEEGSARKKL RLTKEQSTLL EERFKEHSTL NPKQKQALAK QLNLRPRQVE VWFQNRRART  180
KLKQTEVDCE FLKRCCESLT DENRRLQKEL QELKALKLAP PLYMQLPATT LTMCPSCERI  240
TAASADAAKG PVSAAGHFVM APKGHFYNTF TAAHPPSAAC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271511.21e-108PREDICTED: homeobox-leucine zipper protein HAT22 isoform X2
SwissprotP466043e-83HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA5B6261e-107A5B626_VITVI; Uncharacterized protein
STRINGVIT_00s0732g00010.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-63HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]