PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0100300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 420aa    MW: 47347.3 Da    PI: 5.6608
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0100300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.41.3e-107418211128
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105
                     de ++  +L +   g++l+  +vi++v+ ++++Pw+ p      e+ wy  + ++  +a+g+ +   t +g Wk    d +++  +++++g+k t
  Spipo2G0100300  74 DEKIM-SFLGAWKCGDPLPS-NVISDVNPFSIQPWNAP------ENIWYLCILQEPIAARGEPRVENTPDGCWKDMRCDFKICL-DSQTIGVKAT 159
                     55555.99999999999999.99**************9......467999999999999988888899****************.99******** PP

             NAM 106 LvfykgrapkgektdWvmheyrl 128
                       f++  a+ +    W m ey+l
  Spipo2G0100300 160 WEFFRHAAQPSDGVCWRMFEYNL 182
                     ****99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.3164205IPR003441NAC domain
SuperFamilySSF1019411.7E-1865205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MHLITLKFSF EFDCNISNRR LLDRRSPKTE KKKPMASLRP TYKRLLLNLM ILKLKYAMSP  60
LGYTPSSIED DWTDEKIMSF LGAWKCGDPL PSNVISDVNP FSIQPWNAPE NIWYLCILQE  120
PIAARGEPRV ENTPDGCWKD MRCDFKICLD SQTIGVKATW EFFRHAAQPS DGVCWRMFEY  180
NLKTKECETA RKPQNFKALY RIFVRSNHLP VFEDPHTLVS LGDDDCAHMQ SVLLSMLERE  240
EGDIDLLEPA NVSEGSMEVS NRSLEDSRAN PLAEVPVDFD FSNGDFLELK DFNDTDSSSS  300
SSDNSSCVSQ SSDDYFDSEA LLRDLKNDSN LAVEGHSHLE CKPCTSRSLK TKRMAIKLHP  360
QKPARLPRPT SPLPEQYQGT DSNPQQPGTS QGNRGNDHPQ TGIDRAGGTA IPPRLHARA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11832RRLLDRRSPKTEKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1Z0V14e-87A0A1D1Z0V1_9ARAE; NAC domain-containing protein 29
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.14e-11NAC domain containing protein 17