PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo2G0085100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TCP | ||||||||
Protein Properties | Length: 238aa MW: 25759.7 Da PI: 9.2614 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96.6 | 4.8e-30 | 49 | 120 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 g+kdrhsk+ T++g+RdRRvRls+++a++++dLqd+LG+ ++sk+++WLl +a+++i++l+ ++ ++ s+ Spipo2G0085100 49 NGGKDRHSKVTTARGLRDRRVRLSVQTAIQLYDLQDRLGLNQPSKAVDWLLDAAQHEIDKLPPLQIPPGSSL 120 589*************************************************************66666443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-28 | 50 | 112 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.704 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MIRNPREGAP STKQEEEAPP GDGNSGRGGS RPWPTALRDT RVVRGSRANG GKDRHSKVTT 60 ARGLRDRRVR LSVQTAIQLY DLQDRLGLNQ PSKAVDWLLD AAQHEIDKLP PLQIPPGSSL 120 YHNPPPPPQL VMPEKDDLQN AYSGYFLMEP PPPNPAGGNV AAQEEAQSYY RHPALQPTAA 180 PPPSLPLSLS HGSQLLLSMF SPYPAAAASS EYDPRHVNGS FEMGSSSGSQ GSRHHRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00065 | PBM | Transfer from AT5G60970 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006845879.1 | 1e-44 | transcription factor TCP5 | ||||
Refseq | XP_011623969.1 | 1e-44 | transcription factor TCP5 | ||||
Refseq | XP_020523844.1 | 1e-44 | transcription factor TCP5 | ||||
Refseq | XP_020523845.1 | 1e-44 | transcription factor TCP5 | ||||
Refseq | XP_020523846.1 | 1e-44 | transcription factor TCP5 | ||||
Refseq | XP_020523847.1 | 1e-44 | transcription factor TCP5 | ||||
Refseq | XP_020523848.1 | 1e-44 | transcription factor TCP5 | ||||
STRING | ERN07554 | 4e-44 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 6e-39 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Spipo2G0085100 |