PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo2G0082200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25066.7 Da PI: 8.9479 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.7 | 2.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCda+v++iifs++gklye+ss Spipo2G0082200 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDADVSLIIFSNRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 99.2 | 6e-33 | 83 | 172 | 11 | 100 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++++++qe+ kLk ++e L+r+ R llGedL+sL+ +eL+qLe+qLe slk+iRs+K++++l+q+ +l++ke++lqe n+ Lr+kl+e Spipo2G0082200 83 CKETQNSYQEYLKLKGRVEALKRSERTLLGEDLDSLNTRELEQLENQLEISLKHIRSTKTQVMLDQLCDLKRKEQMLQESNRVLRQKLQE 172 5689***********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.221 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.92E-34 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.95E-46 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 3.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.4E-28 | 85 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.391 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0071492 | Biological Process | cellular response to UV-A | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD ADVSLIIFSN RGKLYEFSSN 60 SMQKTLERYQ KCSYSIAEPV VPCKETQNSY QEYLKLKGRV EALKRSERTL LGEDLDSLNT 120 RELEQLENQL EISLKHIRST KTQVMLDQLC DLKRKEQMLQ ESNRVLRQKL QENGPENCLQ 180 LTWGISGVDS GNPSGHQAAA HPEGLFQPLL GFDLPLQIG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 3e-27 | 74 | 170 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 3e-27 | 74 | 170 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 3e-27 | 74 | 170 | 1 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 3e-27 | 74 | 170 | 1 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF469321 | 8e-49 | KF469321.1 Brachypodium distachyon MADS-box transcription factor 26 mRNA, complete cds. | |||
GenBank | KJ002716 | 8e-49 | KJ002716.1 Phyllostachys edulis MADS-box protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010257958.1 | 1e-101 | PREDICTED: developmental protein SEPALLATA 1 | ||||
Swissprot | Q8LLR2 | 7e-91 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A1D1XUS7 | 1e-122 | A0A1D1XUS7_9ARAE; MADS-box protein CMB1 (Fragment) | ||||
STRING | XP_010257958.1 | 1e-100 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2221 | 32 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 3e-85 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo2G0082200 |
Publications ? help Back to Top | |||
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