PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0082200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25066.7 Da    PI: 8.9479
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0082200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.3e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCda+v++iifs++gklye+ss
  Spipo2G0082200  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDADVSLIIFSNRGKLYEFSS 59
                    79***********************************************96 PP

2K-box99.26e-338317211100
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      +++++++qe+ kLk ++e L+r+ R llGedL+sL+ +eL+qLe+qLe slk+iRs+K++++l+q+ +l++ke++lqe n+ Lr+kl+e
  Spipo2G0082200  83 CKETQNSYQEYLKLKGRVEALKRSERTLLGEDLDSLNTRELEQLENQLEISLKHIRSTKTQVMLDQLCDLKRKEQMLQESNRVLRQKLQE 172
                     5689***********************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.221161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-34274IPR002100Transcription factor, MADS-box
CDDcd002654.95E-46275No hitNo description
PRINTSPR004043.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.4E-2885171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.39186176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD ADVSLIIFSN RGKLYEFSSN  60
SMQKTLERYQ KCSYSIAEPV VPCKETQNSY QEYLKLKGRV EALKRSERTL LGEDLDSLNT  120
RELEQLENQL EISLKHIRST KTQVMLDQLC DLKRKEQMLQ ESNRVLRQKL QENGPENCLQ  180
LTWGISGVDS GNPSGHQAAA HPEGLFQPLL GFDLPLQIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-27741701101Developmental protein SEPALLATA 3
4ox0_B3e-27741701101Developmental protein SEPALLATA 3
4ox0_C3e-27741701101Developmental protein SEPALLATA 3
4ox0_D3e-27741701101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693218e-49KF469321.1 Brachypodium distachyon MADS-box transcription factor 26 mRNA, complete cds.
GenBankKJ0027168e-49KJ002716.1 Phyllostachys edulis MADS-box protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257958.11e-101PREDICTED: developmental protein SEPALLATA 1
SwissprotQ8LLR27e-91MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1D1XUS71e-122A0A1D1XUS7_9ARAE; MADS-box protein CMB1 (Fragment)
STRINGXP_010257958.11e-100(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22213264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.13e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]