PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo2G0065100

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

MYB

Protein Properties

Length: 319aa MW: 35334.2 Da PI: 7.5021

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo2G0065100	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.1e-16	35	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd ll v++ G g W+t +r+ g+ R++k+c++rw +yl Spipo2G0065100 35 RGPWTPEEDALLSSFVRREGEGKWRTLPRRAGLLRCGKSCRLRWMNYL 82 89****************************99**********97 PP
2	Myb_DNA-binding	47.3	4.7e-15	93	133	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Spipo2G0065100 93 PDEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 133 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.01	30	82	IPR017930	Myb domain
SuperFamily	SSF46689	4.03E-28	32	129	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-11	34	84	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-13	35	82	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-20	36	89	IPR009057	Homeodomain-like
CDD	cd00167	1.28E-9	37	82	No hit	No description
PROSITE profile	PS51294	24.851	83	137	IPR017930	Myb domain
SMART	SM00717	1.4E-13	87	135	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-24	90	138	IPR009057	Homeodomain-like
CDD	cd00167	6.15E-12	93	133	No hit	No description
Pfam	PF00249	9.3E-14	93	133	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MRNPSPAAAS GSWSETPASG RPKVLPGRGQ VGLKRGPWTP EEDALLSSFV RREGEGKWRT 60 LPRRAGLLRC GKSCRLRWMN YLRPSVKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRLPGR 120 TDNEIKNYWN THLSKKLISQ GIDPRTHKPL NTDNPSSSLQ NDHAEAPPAP AVYPNPNPNP 180 NPNPKPPTRL QNSGGLNSTL HIREDACDFF DGANQDQRSA WQNFDDSSSG RTLPNQYVQN 240 DIEYCSDDLF ASFLNSLISD DVFQQNPPND LISPLAPLAS EGHGFGNQAF WEPTPVVYST 300 TFIDKNYNAQ PTDGDCAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-25	33	137	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276363.1	1e-102	PREDICTED: transcription repressor MYB5-like
Swissprot	Q38850	3e-76	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A1U8B619	1e-101	A0A1U8B619_NELNU; transcription repressor MYB5-like
STRING	XP_010276363.1	1e-102	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	8e-77	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Spipo2G0065100

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]