PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0037400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 264aa    MW: 28488.5 Da    PI: 10.3325
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0037400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.12.9e-261465152
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52
                    kprl+Wt +LH++Fv av++LGG+ kAtPk++++lm+v+gL+l h+kSHLQ 
  Spipo2G0037400 14 KPRLKWTRQLHQQFVGAVSHLGGAAKATPKSVMRLMGVPGLSLCHLKSHLQA 65
                    79*************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-231264IPR009057Homeodomain-like
SuperFamilySSF466891.16E-111365IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-181465IPR006447Myb domain, plants
PfamPF143797.0E-12123162IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVSNRRLAPA SAAKPRLKWT RQLHQQFVGA VSHLGGAAKA TPKSVMRLMG VPGLSLCHLK  60
SHLQALSISF FLSRNILFSV KATTNLAAVI ERRNEVRGSF SSKSIRFSVN GSNVPSVSLT  120
LPQVQTEVPN KLQEQIEVQR RLQLRMEAEE KYIRSLLKKA QEKLAVCSRS YPEMAAAVDR  180
GIAAGSFFGG GPAPSPPADC SSSSCLTTLE RPEEVDEWLL TNEPPTMGTR DGGGGGIYSG  240
HSCRRRSGAQ EGESGTVEID LNR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.48e-39myb-related protein 1