PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo2G0036700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 25262.2 Da PI: 8.9141 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 61 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+++Wk+Ia++++ R++k+c++rw++ Spipo2G0036700 61 RGHWKPAEDTKLRELVALYGPHNWKLIAEKLQ-SRSGKSCRLRWFNQ 106 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 114 | 156 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ +eE+e+l a++++G++ W+ Ia+ ++ gRt++ +k++w+ Spipo2G0036700 114 RAFNEEEEERLMAAHRMYGNR-WAMIAKLFP-GRTDNAVKNHWHV 156 5799*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.58 | 56 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 60 | 109 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.48E-28 | 61 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-16 | 61 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 62 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.58E-13 | 64 | 105 | No hit | No description |
PROSITE profile | PS51294 | 26.061 | 108 | 162 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-14 | 112 | 160 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 114 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-11 | 115 | 155 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 115 | 160 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEDHHPDGRN VDVASDSGSD VFGRSNGNDR EDESLSGEDT RDGVQCGKEA DDNGPAKVCS 60 RGHWKPAEDT KLRELVALYG PHNWKLIAEK LQSRSGKSCR LRWFNQLDPR INKRAFNEEE 120 EERLMAAHRM YGNRWAMIAK LFPGRTDNAV KNHWHVIMAR RRRERNSSIV YGGRKLSQAV 180 PLGSAMKISV ALDRASNRGG GGGFSYSEFC PNPIYAIEFS RDIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-32 | 61 | 161 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008781016.1 | 1e-75 | transcription factor CSA-like | ||||
Swissprot | Q9SEZ4 | 5e-65 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A1D1XH33 | 1e-75 | A0A1D1XH33_9ARAE; Transcription factor MYB44 | ||||
STRING | XP_008781016.1 | 4e-75 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-67 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Spipo2G0036700 |
Publications ? help Back to Top | |||
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