PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo2G0021300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-X1
Protein Properties Length: 1076aa    MW: 114798 Da    PI: 8.2223
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo2G0021300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X122.91.8e-07295313119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C + CH+GpC+pC+
  Spipo2G0021300 295 CGRHRCDRVCHTGPCDPCQ 313
                     ******************6 PP
2zf-NF-X116.71.6e-05359376118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C + CH+GpC++C
  Spipo2G0021300 359 CGNHFCAEDCHPGPCGEC 376
                     ****************** PP
3zf-NF-X117.59e-06411434118
        zf-NF-X1   1 CG......kHkCqklCHeGpCppC 18 
                     CG      +H+C+++CHeG CppC
  Spipo2G0021300 411 CGkflpscIHSCKETCHEGSCPPC 434
                     888888889*************** PP
4zf-NF-X1193e-06515533119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+Cq+lCH G CppC 
  Spipo2G0021300 515 CGQHSCQSLCHSGHCPPCL 533
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.83E-7112187No hitNo description
PROSITE profilePS500168.538119184IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590122181IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.993122182IPR001841Zinc finger, RING-type
CDDcd060084.83E-5215278No hitNo description
SMARTSM004380.29240258IPR000967Zinc finger, NF-X1-type
PfamPF014228.1242257IPR000967Zinc finger, NF-X1-type
CDDcd060083.81E-12285333No hitNo description
SMARTSM004381.4E-4295314IPR000967Zinc finger, NF-X1-type
PfamPF014224.7E-6295312IPR000967Zinc finger, NF-X1-type
CDDcd060081.65E-8349392No hitNo description
SMARTSM004382.3E-4359378IPR000967Zinc finger, NF-X1-type
PfamPF014220.0022359376IPR000967Zinc finger, NF-X1-type
CDDcd060081.12E-10407453No hitNo description
SMARTSM004380.0057411436IPR000967Zinc finger, NF-X1-type
PfamPF014225.3E-4411434IPR000967Zinc finger, NF-X1-type
SMARTSM00438210474492IPR000967Zinc finger, NF-X1-type
PfamPF0142218474484IPR000967Zinc finger, NF-X1-type
CDDcd060083.72E-9505557No hitNo description
SMARTSM004381.2E-4515534IPR000967Zinc finger, NF-X1-type
PfamPF014227.2E-5515532IPR000967Zinc finger, NF-X1-type
CDDcd060087.63E-5562610No hitNo description
SMARTSM004380.084572590IPR000967Zinc finger, NF-X1-type
PfamPF014225.2572589IPR000967Zinc finger, NF-X1-type
SMARTSM004380.5625660IPR000967Zinc finger, NF-X1-type
PfamPF014220.0079625640IPR000967Zinc finger, NF-X1-type
CDDcd060081.47E-4658707No hitNo description
PfamPF014224662688IPR000967Zinc finger, NF-X1-type
SMARTSM004380.18669690IPR000967Zinc finger, NF-X1-type
PfamPF014246.9E-5798865IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MRPGGSGGRR APRAGDGGAG GGNRRQEWVP RGSASPTLNQ TTPPPPPPPV EARVITDLAA  60
HGQQRSRRNQ RHRHHEHAPS AAPNPRPPSA SSLSPVLASA PSSLPQLVQE LQEKLVKGAV  120
ECMICYDMVR RSAAIWSCGS CYSIFHLHCI KKWAKSPTSV DLSAASGADA ASGLNWRCPG  180
CQSVQVTPSK DLQYTCFCGR RRDPPNDLYL IPHSCGEPCG KPMDRGRPPT AEEGGDSLRC  240
PHLCVLQCHP GPCPPCKAFA PRRQCPCGKQ TLARRCSDRT SPLSCGQKCG KLLLCGRHRC  300
DRVCHTGPCD PCQVLISASC FCKKKTEVVL CGEMTVQGDL KGIDGVFSCN STCGKTLACG  360
NHFCAEDCHP GPCGECELLP GRIRTCYCGK TEMKKTRSSC LDPIPSCSQI CGKFLPSCIH  420
SCKETCHEGS CPPCLVLVNQ SCRCGSVSRV VECFRTSSKE LFLCEKPCGK KKKCGRHRCN  480
ERCCSPFYPS SAAGQFSGDW DPHLCQMPCG KKLRCGQHSC QSLCHSGHCP PCLETIFSEL  540
SCACGRTSIP PPQPCGTPYP SCPHPCQVPQ PCGHEATHTC HYGDCPPCSV PVAKECIGGH  600
VVLRNIPCGS RDIRCNQLCG KTRRCGMHAC ARTCHPMPCD STGEPGHGGA AGSMAASCGQ  660
VCGAPRRDCR HTCTATCHPS SPCPDLRCEN PVTIACSCGR ITATVPCGAG GNGAGGGFLE  720
ASIVQKLPVP LQPLEEIGRR VPLGQRKLTC DEECAKLERK RVLAEAFDIA PTNLDALHFG  780
ENPSVSELLS DLLRREPKWV LAVEERFKTL VLGKPPRTSS SSSLKVHVFC SMTKEKRDAV  840
RLMAERWKLA VHAAGWEPRR FLVVRVTPKS KPPAKILGAK PGAPVAGVVP PPPFDPLVDM  900
DPRLVVALLD LPRDADISAL VLRFGGECEL VWMNDKNALA VFADPVRAAT AMRRLDHGSP  960
YHSVVVFLQP GGASGAAGGG GGGAWASSGA KDAAAAMGRA PPNPWKKLVA QEAEVAGSWA  1020
SPNRWNILDT DAAGEPQQQV RKDQAGAPPG PELMIPASTG SATLEEVDDW ENLTD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789280.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1D1XXI30.0A0A1D1XXI3_9ARAE; NF-X1-type zinc finger protein NFXL1
STRINGXP_008789280.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1