PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo29G0023800

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 298aa MW: 31609.6 Da PI: 8.4082

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo29G0023800	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	5e-39	63	122	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Spipo29G0023800 63 EGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 122 5689*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	46	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-33	65	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.609	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MVFSSAPVYL DPPSWMQPTY QHEIGGGDSG QLPLAAPPRP EINPARLGST AERARLAKAA 60 PPEGALKCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRNVP VGGGCRRNKR 120 SKSGSGGSRS AAADRHGGSS TSAVTPPCGG GAAHCGVLPP SQFPFMDYLA AANLRLNLPG 180 GQPVDALNCQ LSGGLEEWRI QQVQEFPHLT TMEQATVPPS MGLFQFQEEP PVSQLSMMKM 240 EENPQRLTLP EQYLGVAGNY HYWGGGACVG VPGGSASGGG WAADLPGFNP SSTSNLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC104433	5e-57	AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence.
GenBank	AP014959	5e-57	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	5e-57	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420091.1	1e-79	PREDICTED: dof zinc finger protein DOF5.1-like isoform X2
TrEMBL	A0A2H3ZVV0	7e-76	A0A2H3ZVV0_PHODC; dof zinc finger protein DOF5.1-like isoform X2
STRING	XP_008802760.1	9e-76	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	4e-44	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Spipo29G0023800