PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo29G0021100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 23728.6 Da PI: 9.1582 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++lv+ v +lG+++W++Ia+ g++R++k+c++rw +yl Spipo29G0021100 10 KGPWTGQEDLRLVCFVGLLGNRRWDAIAKVSGLRRSGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.3e-17 | 63 | 106 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr+ ++E+ l+vd+++++G++ W++Ia++++ gRt++++k++w++ Spipo29G0021100 63 RGRMNPQEERLIVDLHARWGNR-WSRIAKRLP-GRTDNEIKNYWRT 106 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.025 | 5 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.74E-27 | 9 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.82E-9 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.004 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-15 | 63 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-10 | 65 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVMVREETRK GPWTGQEDLR LVCFVGLLGN RRWDAIAKVS GLRRSGKSCR LRWVNYLRPG 60 LKRGRMNPQE ERLIVDLHAR WGNRWSRIAK RLPGRTDNEI KNYWRTRMRK KAQEKGTSTS 120 SPILSSSSSD KPGEEDSHEL HGGGGGAPAT PLDQTWNESA PSTMSESTLH EAWCYSGESL 180 WKIDDDEGDF GLALPTVDLS GPSYYHGMEP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905710.1 | 1e-77 | myb-related protein MYBAS2 isoform X1 | ||||
Swissprot | Q4JL76 | 2e-66 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A2H3XSU6 | 2e-73 | A0A2H3XSU6_PHODC; myb-related protein MYBAS2 isoform X1 | ||||
STRING | XP_008788078.1 | 3e-74 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 5e-64 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Spipo29G0021100 |
Publications ? help Back to Top | |||
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