PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo29G0015300
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family CO-like
Protein Properties Length: 309aa    MW: 32964.1 Da    PI: 4.7559
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo29G0015300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.14.1e-09348342
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     +r C+ +++  +  fC+ ++ +lC+ C  e H+       H++v++
  Spipo29G0015300  3 ARECDSCNSAAAVVFCRADSAFLCAACDGEVHSAnrfasrHERVKI 48
                     579*****************************66889999999886 PP
2zf-B_box27.85.1e-094690341
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      ++C+ +e+  + +fC+ +  +lC+ C    H+       H+++p
  Spipo29G0015300 46 VKICEVCEQAAAAIFCKADAAMLCAACDADVHSAnplarrHDRQP 90
                     689*******9*********************6688888898877 PP
3CCT691.3e-23233276144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKr++R+FeK+irY+sRKa+Ae+RpRvKGrF+k+a
  Spipo29G0015300 233 REARLMRYREKRSSRRFEKTIRYASRKAYAETRPRVKGRFAKRA 276
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.651148IPR000315B-box-type zinc finger
SMARTSM003361.1E-12148IPR000315B-box-type zinc finger
PfamPF006433.7E-7448IPR000315B-box-type zinc finger
CDDcd000214.93E-8648No hitNo description
PROSITE profilePS5011911.4624491IPR000315B-box-type zinc finger
PfamPF006434.7E-74691IPR000315B-box-type zinc finger
CDDcd000216.09E-74891No hitNo description
SMARTSM003363.7E-84991IPR000315B-box-type zinc finger
PfamPF062031.1E-17233275IPR010402CCT domain
PROSITE profilePS5101716.658233275IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAARECDSCN SAAAVVFCRA DSAFLCAACD GEVHSANRFA SRHERVKICE VCEQAAAAIF  60
CKADAAMLCA ACDADVHSAN PLARRHDRQP VVPFRDSPPL AGVKLAGGES LSPPTPAPVP  120
AIARDEEEEA LSWLIPEENH KVLMDIPDLK EEMDFFFFSD ADYASCMEDS VVPVQPAAVA  180
GDPPAFTACF DQELGGSATM SSSEVGTVPE ANATAEVTNP YGGAAAAALG MSREARLMRY  240
REKRSSRRFE KTIRYASRKA YAETRPRVKG RFAKRAAAEE PEFTYQAAAG GAAGYLAADY  300
DYAVVPSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789696.11e-90zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A2H3XWR63e-89A0A2H3XWR6_PHODC; zinc finger protein CONSTANS-LIKE 4
STRINGXP_008789696.14e-90(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.12e-59CONSTANS-like 3