PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo29G0009700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 297aa MW: 32409.2 Da PI: 6.6336

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo29G0009700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.3e-52	8	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL++++++ ++++ ++i+evdiyk++Pw+Lp+k+ ++kewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ Spipo29G0009700 8 LPPGFRFHPTDEELIQYYLRNQATSLPCPV-SIIAEVDIYKFDPWELPAKAMFGDKEWYFFSPRDRKYPNGVRPNRAAASGYWKATGTDKPIVA 100 79**************************.89***********888889************************************ PP NAM 95 k.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e +g+kk Lvfy+gr pkg ktdW+mheyrl Spipo29G0009700 101 GgggggaaaaRKESIGVKKALVFYQGRPPKGIKTDWIMHEYRL 143 98888888777777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-63	5	176	IPR003441	NAC domain
PROSITE profile	PS51005	59.369	8	176	IPR003441	NAC domain
Pfam	PF02365	5.1E-27	9	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MANPETLLPP GFRFHPTDEE LIQYYLRNQA TSLPCPVSII AEVDIYKFDP WELPAKAMFG 60 DKEWYFFSPR DRKYPNGVRP NRAAASGYWK ATGTDKPIVA GGGGGGAAAA RKESIGVKKA 120 LVFYQGRPPK GIKTDWIMHE YRLADGAGGR HHGGFKRPRD SSMRLDDWVL CRIYKKSNNQ 180 HPSSPSDRDQ EVSTVDDTYF PPSHAGGGGH LPKNASLSDL FDDADFSVLT RLLNENPSNM 240 GDPELDQSFN CGGIFSLLTA EESPPKRPRT AEEQAAPDGG GAAAAAFDRE KPPVGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-69	2	178	9	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010922870.1	1e-110	NAC domain-containing protein 2
Swissprot	K4BNG7	7e-87	NAP2_SOLLC; NAC domain-containing protein 2
Swissprot	Q84TD6	2e-86	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A1D1Z9K1	1e-116	A0A1D1Z9K1_9ARAE; NAC domain-containing protein 29
STRING	GSMUA_Achr4P02380_001	1e-106	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	1e-83	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Spipo29G0009700

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]