PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo29G0009400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 219aa MW: 23598.8 Da PI: 9.5191 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.8 | 1.2e-38 | 97 | 155 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++k+l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr++k Spipo29G0009400 97 PDKILPCPRCNSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRSKP 155 68999***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 94 | 154 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.3E-32 | 99 | 154 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.77 | 101 | 155 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 103 | 139 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MMVQGKDPAI KLFGRTIPVV GRGAVGEAVR DSDPSLADGA VGESKIGFRG RKNAAAKEGL 60 LEKPRGRDQI EPSLPSAEEK EQGEAEGSGQ EKTLKRPDKI LPCPRCNSLD TKFCYYNNYN 120 VNQPRHFCKN CQRYWTAGGT MRNVPVGAGR RRSKPSPPPE LFPRRFPAWG SSRGAGLELE 180 WSATVAMDEP LEHHGKLWPA AAAATAAAAT FGLGEVLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020274549.1 | 2e-49 | cyclic dof factor 3-like | ||||
Swissprot | Q8LFV3 | 4e-42 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A200Q0F2 | 3e-48 | A0A200Q0F2_9MAGN; Zinc finger protein | ||||
STRING | ERM97251 | 4e-48 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 8e-43 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Spipo29G0009400 |
Publications ? help Back to Top | |||
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