PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo27G0017800
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family G2-like
Protein Properties Length: 451aa    MW: 49127.7 Da    PI: 5.958
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo27G0017800genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.61.4e-28227290156
          G2-like   1 kprlrWtpeLHerFveaveqLGGs........ekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      kpr++Wtp+LH+rFv+a++ LGGs        ++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Spipo27G0017800 227 KPRRCWTPDLHRRFVNALQILGGSqgefpttlHVATPKQIRELMNVDGLTNDEVKSHLQKYRLH 290
                      79*********************84444444459****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15224293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27224293IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-23227290IPR006447Myb domain, plants
PfamPF002492.6E-6229288IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MERESSQKAW MGSPSELTLD FRPHGHSAAL RAIADQSDQT QNLEDFLSRL EKERLKIEAF  60
KRELPLCMQL LNNAMEAYRQ QLDMHHTNRS PRPVLEEFIP LKNPSVAAEA PEKSAAADDV  120
LSEKTSWMTT AQLWGTAEGA AAVQRTVTPP EATDDKLRTG GAFLPFSKER DGRVRGGLPE  180
LALAPMEKED EKRPYSENGG KGGAAADHAK AAAADGGHAT AVQTQRKPRR CWTPDLHRRF  240
VNALQILGGS QGEFPTTLHV ATPKQIRELM NVDGLTNDEV KSHLQKYRLH TRRPISAPQA  300
SAAAAPPQLV VLGGIWVPPE YTASSTTAKA GQLFYGGHPA AAHYCAAAVQ QEFYSPPLQP  360
PHYHHGTASA ARAALAAPHE MKRESPESEM RRSPGSTHST EEDEEVEGDD DDDDVEEGRP  420
SEAAGGKEVD DKEAAPLRED GKLSGVRLKF *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792133.11e-127transcription factor NIGTH1
TrEMBLA0A1D1XR821e-130A0A1D1XR82_9ARAE; Two-component response regulator ARR18 (Fragment)
STRINGXP_008792133.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97733338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.15e-84G2-like family protein