PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo26G0023800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | G2-like | ||||||||
Protein Properties | Length: 409aa MW: 44213.3 Da PI: 5.9619 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.7 | 4.7e-27 | 160 | 214 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++Wtp+LH+rFv+aveqL G +kA+P++ilelm+++ Lt+++++SHLQkYR++ Spipo26G0023800 160 KMKVDWTPDLHRRFVQAVEQL-GVDKAVPSRILELMGIDYLTRHNIASHLQKYRSH 214 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.329 | 157 | 216 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-17 | 158 | 217 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 158 | 217 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-26 | 160 | 214 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-8 | 163 | 212 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MLAISPLRSR NDDERGGESA GDFSALGSGG ADNFSGDFSA GDLLESIDFD DLFVGFDDGD 60 TLPDLELDPT EMLAEFSIGG GEDSGTTTAS RSTGDQDLER TDESEKREAE EDEKQSSNTD 120 GAAPNDDGVA VSAGSSSSPE TDKGRKSSAS QAKSTQGKRK MKVDWTPDLH RRFVQAVEQL 180 GVDKAVPSRI LELMGIDYLT RHNIASHLQK YRSHRKHMLA REAEAASWSQ RRQMYSAPPA 240 GGGTKREVTP WPAPTLGFPP PAQAFRPPLH VWGHPTVDHS MVHMWPKHAV PARSPPPPPW 300 TPQPPPPADP SYWHHPHFRR RFMVPPVPGI PPHPMYKPDG AAPPPPRHGG PPVQVEPHPS 360 KESIDAAIGD VLAKPWLPLP LGLKPPSLDS VLTELQRQGV SKIPPSCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-16 | 157 | 212 | 2 | 57 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275230.1 | 1e-141 | PREDICTED: transcription activator GLK1 | ||||
Swissprot | Q9SIV3 | 7e-88 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A1D1Y9Q2 | 0.0 | A0A1D1Y9Q2_9ARAE; Putative transcription factor GLK1 | ||||
STRING | XP_008783138.1 | 1e-139 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 2e-56 | GOLDEN2-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Spipo26G0023800 |