PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo26G0023400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 289aa    MW: 31743.7 Da    PI: 9.8282
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo26G0023400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.61.5e-33571971128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                      lp+G++F+Ptd+el+ e+L+ k++ +       ++++   ++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  Spipo26G0023400  57 LPAGVKFDPTDQELL-EHLQGKTKPEAqkphplIDEFIPtLQGEnGICYTHPEKLP-GVAKDGHVRHFFHRPSKAYTTGTRKRRKVHtdafggE 148
                      799************.999999887765565443332222444437**********.555667788******************7444566557 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+k+v+s +g l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Spipo26G0023400 149 TRWHKTGKTKPVFS-NGGLKGFKKILVLYtnYGKQRKPEKTNWVMHQYHL 197
                      88************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-3847216IPR003441NAC domain
PROSITE profilePS5100533.11857216IPR003441NAC domain
PfamPF023652.4E-1558197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MTWCNSRNDN RALGRVPTPS AALVNGKSSV ITTESCPSCG LPIQFQEQAI TRELPSLPAG  60
VKFDPTDQEL LEHLQGKTKP EAQKPHPLID EFIPTLQGEN GICYTHPEKL PGVAKDGHVR  120
HFFHRPSKAY TTGTRKRRKV HTDAFGGETR WHKTGKTKPV FSNGGLKGFK KILVLYTNYG  180
KQRKPEKTNW VMHQYHLGSS VEEKDGELVV SKVFYQTQPR QCGSTAKNPA LANSGRTDGT  240
DAGATNGAAD FYYDSFLSYG HHGGNIRASP PHLIPNFSVH AHGSSLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-12461975140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545440.0AC254544.1 Spirodela polyrhiza clone GNAS837-G05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010919316.11e-143NAC domain-containing protein 73
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2H3YG131e-137A0A2H3YG13_PHODC; NAC domain-containing protein 73-like
STRINGXP_008798265.11e-138(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]