PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo26G0017600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 251aa MW: 28703.5 Da PI: 7.5406 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174 | 4.2e-54 | 10 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+++d++++ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ Spipo26G0017600 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIRDIDLNRIEPWDLKDrcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATNAGFWKATGRDKS 102 69****************************.9***************943444442456*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++++ +g++ktLvfy+grap+g+ktdW+mheyrl Spipo26G0017600 103 IHLTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.02E-55 | 7 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.545 | 10 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-28 | 11 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAPGNGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIRDIDLNRI EPWDLKDRCR 60 IGSGPQNEWY FFSHKDKKYP TGTRTNRATN AGFWKATGRD KSIHLTNSKR IGMRKTLVFY 120 TGRAPHGQKT DWIMHEYRLD EDQSDIQLLS SESIGTPFMP SVSLNLSDIE CSQNLMKLTT 180 GEGGVLQQEK LNADWSILEK LLASHQNLDQ IFQSRFNLAA PSQSMDNGCS VQRFPLQYLG 240 CETDFLKFTK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 8 | 141 | 15 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 8 | 141 | 15 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 8 | 141 | 15 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 8 | 141 | 15 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-46 | 8 | 141 | 18 | 147 | NAC domain-containing protein 19 |
3swm_B | 2e-46 | 8 | 141 | 18 | 147 | NAC domain-containing protein 19 |
3swm_C | 2e-46 | 8 | 141 | 18 | 147 | NAC domain-containing protein 19 |
3swm_D | 2e-46 | 8 | 141 | 18 | 147 | NAC domain-containing protein 19 |
3swp_A | 2e-46 | 8 | 141 | 18 | 147 | NAC domain-containing protein 19 |
3swp_B | 2e-46 | 8 | 141 | 18 | 147 | NAC domain-containing protein 19 |
3swp_C | 2e-46 | 8 | 141 | 18 | 147 | NAC domain-containing protein 19 |
3swp_D | 2e-46 | 8 | 141 | 18 | 147 | NAC domain-containing protein 19 |
4dul_A | 3e-46 | 8 | 141 | 15 | 144 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 8 | 141 | 15 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010915633.1 | 1e-124 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 5e-93 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | M0S9J3 | 1e-133 | M0S9J3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P20020_001 | 1e-134 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3461 | 37 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-92 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo26G0017600 |
Publications ? help Back to Top | |||
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