PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo24G0021600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 350aa MW: 36447.6 Da PI: 9.032 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.9 | 5.4e-39 | 52 | 110 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk k++ Spipo24G0021600 52 QQNLRCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKAKTT 110 7899***************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-26 | 51 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-32 | 53 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.292 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MIQELLGGGQ VEANKIPIVG GSSSSSPLSS GPSSPAAAAV APPFSSATNS DQQNLRCPRC 60 DSTNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI GGGCRKAKTT GVSAGRSTKA 120 KTLSSSDAAL IKSSLGGLSV GPPGFEQELP SSHILWPSPP NSHLLTLLRS TVNNTSSNSS 180 AITSNPNPDS NPNSARIKEE GALNLSHLVP DASLLRNALN ARNLGFDHLS QVPLGLSSPW 240 SSNQHQHGGF LFGETPTTGI QELYQRMRSH GQHQADHPEK SLGNVGPPPS TMSSFSPGAA 300 VAPSSPLLAS TAASGPGVLE TATLVGGEFG YWSSPFAWAD MPATNGSFP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC186748 | 2e-50 | AC186748.1 Musa acuminata clone MA4_8L21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460762.1 | 3e-91 | dof zinc finger protein DOF2.4 isoform X2 | ||||
TrEMBL | A0A3N7FCG5 | 8e-90 | A0A3N7FCG5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s11620.1 | 5e-90 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7710 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 2e-34 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Spipo24G0021600 |