PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo23G0015500

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

GRAS

Protein Properties

Length: 753aa MW: 83924.5 Da PI: 6.1279

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo23G0015500	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.3	5.9e-117	375	746	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d + a +lL+++++++sp gd +qRla++f+ +L+arla+++s++y+al ++++s + l+a++l+ ++P+ ++s Spipo23G0015500 375 LRTLLVHCAQAVAADDRRSAGELLKQIRQHSSPWGDGTQRLAHCFADGLEARLAGTGSQMYNALMAKRQS---ATAILKAYHLYLAACPFKRVS 465 6789**********************************************************999998...899************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 h+ aNq+I++ +e+++++HiiDf+i G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL+++A++++v++e+ + + ++ Spipo23G0015500 466 HFFANQTIYNIAEKAKKLHIIDFGIYFGFQWPCLIQRLSTRPGGPPKLRITGIDVPQPGfrPNERIEETGRRLEEYARKFNVELEYFP-IGAKW 558 ******************************************************9*************************.799 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+Lr++p+E+l+Vn++++ +l de+v ++s+r++vL+ +++++P v+++ + +++ F++rf eal ++salfd+lea++pr++ Spipo23G0015500 559 EAIRVEDLRIDPEEVLVVNCMYRFRNLIDETVVVDSPRNTVLNNIRKMNPAVFIHGVVNGAFSAPFFVTRFREALFHFSALFDMLEATVPRDHP 652 ******************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er +Ere++gr+++nv+aceg+er+er et+++W+ r +aGF ++pl+ ++k + +r ++++ + ++e+s++l++gWk+r ++++S W+ Spipo23G0015500 653 ERLLIEREIFGRDAMNVIACEGSERVERPETYKQWQVRNLRAGFAQLPLDPGIMKRCRDKVRSIYDKDFVIDEDSQWLLQGWKGRIIYAISTWK 746 *************************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.803	349	726	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-114	375	746	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MTSRALSAVE PVVAESALQQ PAGDADSFNP DDPDSSVDHS SFGDDQSFIL VAASDGHPAP 60 PVSSYPRGDS PEDSEIFSDI ALTYISKMLM EEDMDEKVII YREGAALQAA EKPFYDILGE 120 KYPPPPGQHS SDSPEDSGSS SQHGNSVSSV VNNGCFHDFG EQPSPQIGGF SVSHSSRSSS 180 SSFSPSNGIA SVLDRIRDPQ SSETGRRADD LLVESQPARS FRRGVEEASK FLPDRKKLVI 240 DLESNGFSLL DDRAKVGQID PVDVKVEKEE RGMIPASSKN RKNPHQEDLY LEEGRSVKQS 300 AISSEDDVVR SEMFDMVLLC NQGKPNDAVT SLREALLNEV SKSNPPKNGG QSKGASNNGG 360 KSRGKRQVKK EVVDLRTLLV HCAQAVAADD RRSAGELLKQ IRQHSSPWGD GTQRLAHCFA 420 DGLEARLAGT GSQMYNALMA KRQSATAILK AYHLYLAACP FKRVSHFFAN QTIYNIAEKA 480 KKLHIIDFGI YFGFQWPCLI QRLSTRPGGP PKLRITGIDV PQPGFRPNER IEETGRRLEE 540 YARKFNVELE YFPIGAKWEA IRVEDLRIDP EEVLVVNCMY RFRNLIDETV VVDSPRNTVL 600 NNIRKMNPAV FIHGVVNGAF SAPFFVTRFR EALFHFSALF DMLEATVPRD HPERLLIERE 660 IFGRDAMNVI ACEGSERVER PETYKQWQVR NLRAGFAQLP LDPGIMKRCR DKVRSIYDKD 720 FVIDEDSQWL LQGWKGRIIY AISTWKPDVL RL*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MTSRALSAVE PVVAESALQQ PAGDADSFNP DDPDSSVDHS SFGDDQSFIL VAASDGHPAP  60
PVSSYPRGDS PEDSEIFSDI ALTYISKMLM EEDMDEKVII YREGAALQAA EKPFYDILGE  120
KYPPPPGQHS SDSPEDSGSS SQHGNSVSSV VNNGCFHDFG EQPSPQIGGF SVSHSSRSSS  180
SSFSPSNGIA SVLDRIRDPQ SSETGRRADD LLVESQPARS FRRGVEEASK FLPDRKKLVI  240
DLESNGFSLL DDRAKVGQID PVDVKVEKEE RGMIPASSKN RKNPHQEDLY LEEGRSVKQS  300
AISSEDDVVR SEMFDMVLLC NQGKPNDAVT SLREALLNEV SKSNPPKNGG QSKGASNNGG  360
KSRGKRQVKK EVVDLRTLLV HCAQAVAADD RRSAGELLKQ IRQHSSPWGD GTQRLAHCFA  420
DGLEARLAGT GSQMYNALMA KRQSATAILK AYHLYLAACP FKRVSHFFAN QTIYNIAEKA  480
KKLHIIDFGI YFGFQWPCLI QRLSTRPGGP PKLRITGIDV PQPGFRPNER IEETGRRLEE  540
YARKFNVELE YFPIGAKWEA IRVEDLRIDP EEVLVVNCMY RFRNLIDETV VVDSPRNTVL  600
NNIRKMNPAV FIHGVVNGAF SAPFFVTRFR EALFHFSALF DMLEATVPRD HPERLLIERE  660
IFGRDAMNVI ACEGSERVER PETYKQWQVR NLRAGFAQLP LDPGIMKRCR DKVRSIYDKD  720
FVIDEDSQWL LQGWKGRIIY AISTWKPDVL RL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-51	379	746	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019706347.1	0.0	scarecrow-like protein 9
Refseq	XP_019706348.1	0.0	scarecrow-like protein 9
Refseq	XP_019706349.1	0.0	scarecrow-like protein 9
Refseq	XP_019706350.1	0.0	scarecrow-like protein 9
Refseq	XP_019706351.1	0.0	scarecrow-like protein 9
TrEMBL	A0A1D1YLD4	0.0	A0A1D1YLD4_9ARAE; Scarecrow-like protein 9
STRING	XP_008799752.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Spipo23G0015500