PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo23G0011000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TALE | ||||||||
Protein Properties | Length: 571aa MW: 62676 Da PI: 7.1962 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.3 | 7.1e-10 | 363 | 400 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Spipo23G0011000 363 FEHflHPYPTDMDKQMLAKQTGLSRNQVSNWFINARVR 400 554458******************************88 PP | |||||||
2 | BELL | 96.6 | 2.1e-31 | 231 | 299 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e ++ k++L+s+leeV++rY+ y +q+q+vi sFeavagl+ a+pYt lA +++S+hFrcLk+ai++q+ Spipo23G0011000 231 EQRRMKTRLVSMLEEVYRRYRLYFQQIQAVITSFEAVAGLNMAAPYTPLAVRTLSKHFRCLKEAISNQL 299 567789************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.8E-39 | 168 | 297 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-33 | 173 | 296 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 341 | 404 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-10 | 344 | 408 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.07E-12 | 344 | 405 | No hit | No description |
SuperFamily | SSF46689 | 7.27E-17 | 345 | 410 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-27 | 347 | 408 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.6E-19 | 361 | 400 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MSESYPGGEG QHQQVMVDGV ATAGGVCLPF YHVPQQCRRE KLRYPNANDS PPLHPHTSTA 60 SPPSFFHYQP STATSFTFPC SSSYHMLNTG SSPSATYEYG TSSAFNLLDH HSLFDGSAHH 120 QQTHGVSLSL SSSVASPSHH PHQEHLIGTA SLGCAPVRME PVPAGPFTGY ATILKGSRFL 180 RPAQQMLEEV CGGGSAGGLA GDNGDEVQPL DFAAEGVAEA DRNLDGSISG EQRRMKTRLV 240 SMLEEVYRRY RLYFQQIQAV ITSFEAVAGL NMAAPYTPLA VRTLSKHFRC LKEAISNQLR 300 FINESFGKDG QRKDEISGHK FMTGGFGYQR AASGSAQINQ QPAWRPQRGL PERAVAVLRG 360 WLFEHFLHPY PTDMDKQMLA KQTGLSRNQV SNWFINARVR LWKPMVEEIH SLELRRKVSD 420 SDDNRNSSKQ PDLSSSSFAS PVNDQTRPSS SSQKNPEQLP HKRFQNELAD IAGHVQEPVN 480 FSLENLPSSH HRLDVPMGGV AAGGGHGGVS LTLGLHQNNG YCLSEQLPLN VVRRFGLEES 540 NVAYVMGGFE GQERQFGKEF DGQLLRDFVA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-15 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-15 | 350 | 408 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-15 | 350 | 407 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-15 | 350 | 407 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 1e-15 | 350 | 408 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 1e-15 | 350 | 408 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008801354.1 | 1e-147 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A1D1ZDD1 | 0.0 | A0A1D1ZDD1_9ARAE; BEL1-like homeodomain protein 9 (Fragment) | ||||
STRING | XP_008801354.1 | 1e-147 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-80 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo23G0011000 |