PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo23G0005800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 277aa MW: 30303.1 Da PI: 9.505 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4.2e-11 | 31 | 77 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT eE +++ +a + + + +W ++a++++ g+t+ +++ ++q + Spipo23G0005800 31 QWTHEENKQFENALAVFDERtpdRWQKVASMIP-GKTADDVRRHYQVL 77 6********************************.************75 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.2e-15 | 130 | 174 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky Spipo23G0005800 130 PWTEEEHKKFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 174 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.643 | 27 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 9.1E-9 | 28 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-9 | 31 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.3E-12 | 31 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-6 | 31 | 75 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.79E-8 | 32 | 77 | No hit | No description |
PROSITE profile | PS51294 | 19.66 | 123 | 179 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.81E-18 | 124 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-17 | 126 | 177 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.1E-13 | 127 | 173 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-13 | 127 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 130 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-11 | 130 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MWSGMEILSP AAACLPTSSL FTARTRGAAV QWTHEENKQF ENALAVFDER TPDRWQKVAS 60 MIPGKTADDV RRHYQVLEND VSHIEAGLFP PPGYGSPQFT MEGLKQPFVV AGGKRTGGRP 120 VDQERKKGVP WTEEEHKKFL MGLKKYGKGD WRNISRNFVT TRTPTQVASH AQKYFIRLSS 180 GGKDKRRSSI HDITTVNMSE TAAGAGTPPP QTPVPAVASE ASGIYNPPTA APPNPFDDGR 240 PSYDISAYGV KFQAQSSLPE ISSGPWGEQA LPFQMQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-19 | 23 | 108 | 2 | 87 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362184 | 4e-54 | AK362184.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C15. | |||
GenBank | AK363192 | 4e-54 | AK363192.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013G01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008785419.1 | 9e-95 | transcription factor DIVARICATA isoform X1 | ||||
Refseq | XP_008785420.1 | 9e-95 | transcription factor DIVARICATA isoform X1 | ||||
Swissprot | Q8S9H7 | 8e-85 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A1D1Z8C7 | 1e-104 | A0A1D1Z8C7_9ARAE; Transcription factor MYB1R1 | ||||
STRING | XP_008785419.1 | 3e-94 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 5e-86 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo23G0005800 |
Publications ? help Back to Top | |||
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