PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo21G0030500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TALE
Protein Properties Length: 583aa    MW: 63632 Da    PI: 5.7228
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo21G0030500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.9e-095055421954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      F++  ++yp+ +e++ LA k gLt +qV++WF N R +
  Spipo21G0030500 505 FQNflHPYPKDNEKQLLAIKSGLTRSQVSNWFINARVR 542
                      776679******************************88 PP
2BELL52.51.2e-17381446772
             BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        ka L+++l+++d+ Y+ +v+q+q vi++F +++   + +  +++ l++iS  +++L+++i++q+
  Spipo21G0030500 381 TVKAELITMLQMIDRGYNECVDQVQNVIAAFREATNSAPTQTPARFVLHTISALYKSLRERITSQM 446
                      5699***********************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-11315444IPR006563POX domain
PfamPF075267.1E-20321443IPR006563POX domain
PROSITE profilePS5007111.321483546IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-25485558IPR009057Homeodomain-like
SuperFamilySSF466891.54E-15486555IPR009057Homeodomain-like
SMARTSM003891.7E-5486550IPR001356Homeobox domain
CDDcd000862.50E-11486547No hitNo description
PfamPF059201.1E-14503542IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MENEIFGISM PILSQTTGAM EGSSPHVGPG VIMPTDALTN NSQTYLIGGY PLFSTLQEEA  60
INSLHITGDV NAVSSQMGAS SRLMSLPSGA FGNPDLREHL EESTLSAASI ASLLSGPPSS  120
IPAEDIRASF ISNGCCNRLN SSLSASDNCA FGAEDDAGIL APGRAVSGSN VRWGYDEHVG  180
RQMLQARSLA TVGPSYRVSS GSDSAWVSSK SSLISDDQYT YSVPGNELSL TLGSPQQSAM  240
NIASVPDQCS EMSCSGITQV TSKDNSYRKA AELQVSSQFL RHPSYEVGRA LGLESKHPLP  300
GNEERALECG SSGCVHFSQT LLGSRYLHVA HQILAEVAGR ALEDRHKSDD SGYLCERGSS  360
PLRSDEFRHD SADIRAHEPT TVKAELITML QMIDRGYNEC VDQVQNVIAA FREATNSAPT  420
QTPARFVLHT ISALYKSLRE RITSQMVSLG QQFSCEFMFE MEESLESSFL QKQWALQQLR  480
NDHQSWRPQR GLPEKSVAVL RGWMFQNFLH PYPKDNEKQL LAIKSGLTRS QVSNWFINAR  540
VRLWKPMIEE MYQELSKKGR SEEGTGDHGN NGDGASQRIR TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A1e-14492550159Homeobox protein Meis2
5bng_B1e-14492550159Homeobox protein Meis2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1ZF000.0A0A1D1ZF00_9ARAE; Homeobox protein ATH1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-70homeobox gene 1