PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo21G0029600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 251aa MW: 26142.8 Da PI: 7.8658 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.3 | 9.3e-40 | 21 | 81 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++l+cprCdstntkfCyynny+lsqPr+fCk CrryWtkGGalrn+PvGgg+rkn k+s Spipo21G0029600 21 EEQHLRCPRCDSTNTKFCYYNNYNLSQPRHFCKDCRRYWTKGGALRNIPVGGGTRKNSKRS 81 68999****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-26 | 11 | 74 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.5E-33 | 23 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.329 | 25 | 79 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 27 | 63 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MKDPSTAAFQ AAIKAPKFPQ EEQHLRCPRC DSTNTKFCYY NNYNLSQPRH FCKDCRRYWT 60 KGGALRNIPV GGGTRKNSKR SAPSSSSSSS HTKRSISSPS PAAATHAAAE AGETAAASSI 120 STIQFPKLEA IPSVYSSTDA DRQLLDFTGS FSSLLTSHGH FGSLLDSFHA GGAGVLGLPG 180 SIDMGRPIGN PSLDLHSPGD GGDMSGAPAA DAQQAPLGDN LLGLPADSSC WSGSSGWSDL 240 SIYTPGSNFQ * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP662922 | 6e-44 | KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008797869.1 | 2e-68 | dof zinc finger protein DOF3.1-like | ||||
TrEMBL | A0A1D1ZGX4 | 1e-69 | A0A1D1ZGX4_9ARAE; Dof zinc finger protein DOF1.7 (Fragment) | ||||
STRING | XP_008797869.1 | 7e-68 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51700.1 | 3e-35 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo21G0029600 |