PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0036000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family Dof
Protein Properties Length: 317aa    MW: 33556.4 Da    PI: 7.719
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0036000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.71.4e-3954113261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      +ek+++cprC+s+ tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s
  Spipo20G0036000  54 PEKIIPCPRCNSMATKFCYYNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKHS 113
                      78999*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2851111IPR003851Zinc finger, Dof-type
PfamPF027011.6E-3156112IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.49158112IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106096IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKESCDDDCP GSGAGIERPA ADLEAAPAKG PEGEEEGDCK IEPPGPEKTA MKKPEKIIPC  60
PRCNSMATKF CYYNNYNVNQ PRHFCKNCQR YWTAGGSMRN VPVGAGRRKN KHSAAAAAAA  120
AAQPTVLRFG SDDPLCDSTR LAEKPHLAAA PSSPHSSGSS VAASNLTEDG GGSHLQEQVL  180
RSSHGSSYPP PPTTWPSPWS ASAAVPVYPT AGFWGWGAAP PWLAAPVLGK HSREAGDAPL  240
KQESSGQIHG DSCRLWVPKT LRIDNPEEAA RSSIWAMAGG FFKPFDHPKD GIRSSASLFH  300
ANPAALSRSL NFQEST*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258324.15e-81PREDICTED: cyclic dof factor 2-like
SwissprotQ93ZL53e-61CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A1U8A9S91e-79A0A1U8A9S9_NELNU; cyclic dof factor 2-like
STRINGXP_010258324.12e-80(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.12e-37Dof family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]