PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo20G0022400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 257aa    MW: 28108.7 Da    PI: 4.309
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo20G0022400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-194193456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++++ eq+++Le+ Fe+++++  e++ +LA++lgL  rqV vWFqNrRa++k
  Spipo20G0022400 41 KRRLSGEQVRALERSFEEENKLEPERKVRLAEELGLRPRQVAVWFQNRRARWK 93
                     44799***********************************************9 PP
2HD-ZIP_I/II110.89.1e-3639106168
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkr 68 
                      e+krrls eqv++LE+sFeee+kLeperKv+la+eLgl+prqvavWFqnrRAR+k+kqlE+dy+aLk 
  Spipo20G0022400  39 ERKRRLSGEQVRALERSFEEENKLEPERKVRLAEELGLRPRQVAVWFQNRRARWKAKQLERDYAALKW 106
                      69****************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-202096IPR009057Homeodomain-like
SuperFamilySSF466891.59E-193297IPR009057Homeodomain-like
PROSITE profilePS5007117.6053595IPR001356Homeobox domain
SMARTSM003891.7E-183899IPR001356Homeobox domain
CDDcd000864.87E-184096No hitNo description
PfamPF000461.1E-164193IPR001356Homeobox domain
PRINTSPR000311.4E-56675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000311.4E-57591IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKRTRSSSSS ELMGLSATGE EGVYEDEDGG GGAAATGGER KRRLSGEQVR ALERSFEEEN  60
KLEPERKVRL AEELGLRPRQ VAVWFQNRRA RWKAKQLERD YAALKWRSCG RGPAKKEEEE  120
EEEEEEVVVA GEDYDSKVGL SEEEPLLPAE SDDSAAVVTG AGDECSPAPR GQPQLAGPPP  180
LIPALDGGAA ADGYYYCDDP PSFYHRHLSG SPPPVVVRMV EEHNFLSSDE PFGGGGSLFA  240
DDQPPTLSWY YSDQWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843ERKRRL
28795RRARWKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.14e-30homeobox protein 6