PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo20G0021100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21565 Da PI: 9.5823 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.2 | 2.1e-23 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n++ rqvtfskRr ++KKAeE +L dae +i+fsstgklyeyss Spipo20G0021100 10 KIDNTTTRQVTFSKRRRSLFKKAEEFAILSDAEMGLIVFSSTGKLYEYSS 59 69**********************************************96 PP | |||||||
2 | K-box | 16.5 | 3.5e-07 | 102 | 147 | 24 | 69 |
K-box 24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 L+k++ + ++R+l+ +d+++L+l+eLq++e++Le l ++ ++K Spipo20G0021100 102 LRKKVLESTLQLRQLKADDMGRLTLEELQNMEKALEAILCQVLKTK 147 455544444678************************9998887666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.3E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.731 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.08E-33 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 7.85E-27 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-21 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MGREKTNIRK IDNTTTRQVT FSKRRRSLFK KAEEFAILSD AEMGLIVFSS TGKLYEYSSN 60 SVKETIERHN HHSRVALKLV PPSLELQFFV TSQFQEKIRE SLRKKVLEST LQLRQLKADD 120 MGRLTLEELQ NMEKALEAIL CQVLKTKILL NSDIYFPSSY AFTCLYAEDM KFFPLSNYCN 180 LISSGM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-13 | 1 | 80 | 1 | 85 | MEF2C |
5f28_B | 2e-13 | 1 | 80 | 1 | 85 | MEF2C |
5f28_C | 2e-13 | 1 | 80 | 1 | 85 | MEF2C |
5f28_D | 2e-13 | 1 | 80 | 1 | 85 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026388718.1 | 9e-47 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_026388719.1 | 9e-47 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_026455805.1 | 8e-47 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_026455806.1 | 8e-47 | MADS-box protein JOINTLESS-like | ||||
Swissprot | Q9FVC1 | 1e-43 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A1D1YHQ0 | 6e-49 | A0A1D1YHQ0_9ARAE; MADS-box protein SVP | ||||
TrEMBL | A0A1D1Z0G2 | 6e-49 | A0A1D1Z0G2_9ARAE; MADS-box protein SVP | ||||
STRING | XP_010277487.1 | 4e-46 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1221 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 6e-46 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo20G0021100 |