PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0106500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 276aa    MW: 30495.6 Da    PI: 9.4258
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0106500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54.1e-17102158256
                     T--SS--HHHHHHHHHHHH..HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFe..knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rkR ++++eq  +Le+ F+  +  +p +++++ LAk+l+L  rqV vWFqNrRa+ k
  Spipo1G0106500 102 RKRLRLSNEQSAVLENTFRvhQMLNPEQTQKTALAKQLNLRPRQVEVWFQNRRARTK 158
                     89*****************44466888889999**********************98 PP
2HD-ZIP_I/II103.51.8e-33102192190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLepe..rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +k++rls+eq+++LE++F+ ++ L+pe  +K++la++L+l+prqv+vWFqnrRARtk+kq+E   ++Lkr++++l+een+rL +ev++Lr +
  Spipo1G0106500 102 RKRLRLSNEQSAVLENTFRVHQMLNPEqtQKTALAKQLNLRPRQVEVWFQNRRARTKLKQTELSRDFLKRHCEKLTEENQRLLSEVQHLR-S 192
                     5899********************99733699*********************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.9E-61974IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.604.6E-1877161IPR009057Homeodomain-like
SuperFamilySSF466891.92E-1789161IPR009057Homeodomain-like
PROSITE profilePS5007116.87698160IPR001356Homeobox domain
SMARTSM003891.6E-14100164IPR001356Homeobox domain
CDDcd000862.86E-15102161No hitNo description
PfamPF000462.0E-14102158IPR001356Homeobox domain
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
SMARTSM003405.2E-14160203IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTAEGVELEF TLGNAAEPRW RSFLAAASAE RRRPAARPVC EGIDVNCEPP PAAAAEEMAG  60
GVSPRSIVSS VITGDNRKGD NGTDCPQGGS TSDEEDGNEG TRKRLRLSNE QSAVLENTFR  120
VHQMLNPEQT QKTALAKQLN LRPRQVEVWF QNRRARTKLK QTELSRDFLK RHCEKLTEEN  180
QRLLSEVQHL RSLKFSPTKL YMGMAAPPTT LTVCLSCQRS SATVPSPSLP ADSRRHHWPL  240
LLHQPLRPYH PIVTPLPHGT PARPPTGQHV TLGPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13037RRRPAARP
2152160RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104860.21e-62homeobox-leucine zipper protein HAT4
SwissprotP466022e-53HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A3S3NJ103e-62A0A3S3NJ10_9MAGN; Homeobox-leucine zipper protein HAT4
STRINGXP_010104860.14e-62(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-52homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]