PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0100900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 237aa MW: 25297.3 Da PI: 8.4781 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.5e-39 | 43 | 101 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e+al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk++ Spipo1G0100900 43 EHALNCPRCQSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRT 101 6789*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-28 | 39 | 100 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.6E-34 | 44 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.096 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDTAQWPQDM GLTKSSMEGM MVPSGCTTAR PQLMERRPRP PREHALNCPR CQSTNTKFCY 60 YNNYSLSQPR YFCKTCRRYW TEGGSLRNVP VGGGSRKNKR TGDFCSTVSP NPLTCSSAAS 120 SGAQSAMDLL RGGVSCKGMS PFLPLMMAPD GGTVYSAGFG LQDFRSSSIN FPVDGIAGDG 180 GYGNVQDGSG RLFFPFEDLR RQVSSGDADV DQSRGQGGDP SVFWNGVIGG GGGASW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010252779.1 | 2e-72 | PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 | ||||
TrEMBL | A0A1U7ZI96 | 5e-71 | A0A1U7ZI96_NELNU; dof zinc finger protein DOF4.6-like isoform X1 | ||||
STRING | XP_010252779.1 | 8e-72 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 4e-45 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0100900 |