PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0099200

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

HD-ZIP

Protein Properties

Length: 844aa MW: 90365.9 Da PI: 6.3726

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0099200	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.2	8.9e-21	139	194	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe+lF+++++p++++r eL+kkl L+ rqVk+WFqNrR+++k Spipo1G0099200 139 KKRYHRHTPWQIQELEALFKECPHPDEKQRLELSKKLALDSRQVKFWFQNRRTQMK 194 688999***********************************************999 PP
2	START	187.2	8.8e-59	350	573	2	206
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 la++a++elvk+a+ eep+W +++ e +n++e+++ + + +ea r++g+v+ ++ lve+l+d k +W e+++ k + + Spipo1G0099200 350 LALAAMDELVKMAQMEEPLWIRDVsgrEVLNSEEYVRVSSH--ClgskpvgFVTEATRETGIVIINSSALVETLMDGK-RWPEMFPsmiaKTSPT 441 6899******************88888888888877743..355888999**********************.***665555666 PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169 +vi g g+lqlm aelq+lsplvp R++ f+Ry++++ +g+w++vdvSv++ + + +++v +++lpSg+l+++++ng+skvtwveh Spipo1G0099200 442 DVIYMGmggtrnGTLQLMRAELQVLSPLVPiREVNFLRYCKEHAQGVWAVVDVSVEPITGGSPgLHPSVSCRRLPSGCLVQDMPNGYSKVTWVEH 536 666666***************************************************9999************************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++ +h l+r+l++sg+a ga++wvatlqrqce+ Spipo1G0099200 537 AEYDESGVHLLYRPLLRSGMALGAQRWVATLQRQCEC 573 *********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.84E-20	123	196	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-21	123	190	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.054	136	196	IPR001356	Homeobox domain
SMART	SM00389	4.3E-18	137	200	IPR001356	Homeobox domain
Pfam	PF00046	2.9E-18	139	194	IPR001356	Homeobox domain
CDD	cd00086	3.29E-18	139	196	No hit	No description
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.849	340	576	IPR002913	START domain
SuperFamily	SSF55961	6.28E-31	342	573	No hit	No description
CDD	cd08875	1.82E-111	344	572	No hit	No description
SMART	SM00234	1.6E-43	349	573	IPR002913	START domain
Pfam	PF01852	1.0E-51	350	573	IPR002913	START domain
SuperFamily	SSF55961	1.19E-20	603	835	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MSFGGFLDSS SAGATVVVDI PYSSTTAGMP AGVMSQPRLL SPSLPKSIFS SPSLSLALQT 60 NLEGGGVGGA SGGHNEMLRQ IAGVGDFDSP GGGGFIAGAG FAGKSNGGQR EDENESRSGS 120 DNMEGGSGDD NDPENPPKKK RYHRHTPWQI QELEALFKEC PHPDEKQRLE LSKKLALDSR 180 QVKFWFQNRR TQMKTQLERH ENALLRQENE KLKMENMHIR ESMRNPMCQN CGGAATLGQV 240 SMEQQQLRLE NARLRDELDR VTALAGRFIG RPIGSFAGQL SHMPDSSLEL AVGGNGFAGL 300 CPVPSALPPV TDYVTGISSG MPVVTPSSVR PVAPVGEVDR SFERSMLVDL ALAAMDELVK 360 MAQMEEPLWI RDVSGREVLN SEEYVRVSSH CLGSKPVGFV TEATRETGIV IINSSALVET 420 LMDGKRWPEM FPSMIAKTSP TDVIYMGMGG TRNGTLQLMR AELQVLSPLV PIREVNFLRY 480 CKEHAQGVWA VVDVSVEPIT GGSPGLHPSV SCRRLPSGCL VQDMPNGYSK VTWVEHAEYD 540 ESGVHLLYRP LLRSGMALGA QRWVATLQRQ CECLAVLMSS VLSNRELPMT GITAAGRRSM 600 LKLAQRMTAN FCAGVCASSV HSWAKLNIGA VGEDVRVMTR KSENDPGEPP GVVLSAATSV 660 WLPSAPQRVF DFLRNASLRS EWDILSNGGP MQEMAHIAKG QDQGNAVSLL RASAGGTNQS 720 SMLILQETCT DASGSLVVYA PVDIPAMHLV MNGGDSSCVA LLPSGFAISP DGPDMRGSQQ 780 QSHNAGGNSS PPSAAGGSLL TVAFQILVNS LPTAKLTVES VETVNNLISC TVKKIKVALH 840 CDN*

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MSFGGFLDSS SAGATVVVDI PYSSTTAGMP AGVMSQPRLL SPSLPKSIFS SPSLSLALQT  60
NLEGGGVGGA SGGHNEMLRQ IAGVGDFDSP GGGGFIAGAG FAGKSNGGQR EDENESRSGS  120
DNMEGGSGDD NDPENPPKKK RYHRHTPWQI QELEALFKEC PHPDEKQRLE LSKKLALDSR  180
QVKFWFQNRR TQMKTQLERH ENALLRQENE KLKMENMHIR ESMRNPMCQN CGGAATLGQV  240
SMEQQQLRLE NARLRDELDR VTALAGRFIG RPIGSFAGQL SHMPDSSLEL AVGGNGFAGL  300
CPVPSALPPV TDYVTGISSG MPVVTPSSVR PVAPVGEVDR SFERSMLVDL ALAAMDELVK  360
MAQMEEPLWI RDVSGREVLN SEEYVRVSSH CLGSKPVGFV TEATRETGIV IINSSALVET  420
LMDGKRWPEM FPSMIAKTSP TDVIYMGMGG TRNGTLQLMR AELQVLSPLV PIREVNFLRY  480
CKEHAQGVWA VVDVSVEPIT GGSPGLHPSV SCRRLPSGCL VQDMPNGYSK VTWVEHAEYD  540
ESGVHLLYRP LLRSGMALGA QRWVATLQRQ CECLAVLMSS VLSNRELPMT GITAAGRRSM  600
LKLAQRMTAN FCAGVCASSV HSWAKLNIGA VGEDVRVMTR KSENDPGEPP GVVLSAATSV  660
WLPSAPQRVF DFLRNASLRS EWDILSNGGP MQEMAHIAKG QDQGNAVSLL RASAGGTNQS  720
SMLILQETCT DASGSLVVYA PVDIPAMHLV MNGGDSSCVA LLPSGFAISP DGPDMRGSQQ  780
QSHNAGGNSS PPSAAGGSLL TVAFQILVNS LPTAKLTVES VETVNNLISC TVKKIKVALH  840
CDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00418	DAP	Transfer from AT3G61150	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010661562.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
Swissprot	Q9M2E8	0.0	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBL	A0A1D1ZLC7	0.0	A0A1D1ZLC7_9ARAE; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRING	XP_010255501.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1203	37	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Link Out ? help Back to Top
Phytozome	Spipo1G0099200

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]