PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0086600

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 339aa MW: 39074.6 Da PI: 6.6308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0086600	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.4	4.7e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kkv++++++l +vikevd+y++ePwdL++ ++ a e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+v Spipo1G0086600 7 VPPGFRFHPTDEELVDYYLRKKVASREIDL-DVIKEVDLYRIEPWDLQEkcRIGAeEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPV 100 69**************************.9***********953444442556******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ +++l+g++ktLvfy+grap+g+k+dW+mheyrle Spipo1G0086600 101 YT-RHSLIGMRKTLVFYQGRAPNGQKSDWIMHEYRLE 136 .889*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-61	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.197	7	156	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MNNFSHVPPG FRFHPTDEEL VDYYLRKKVA SREIDLDVIK EVDLYRIEPW DLQEKCRIGA 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPV YTRHSLIGMR KTLVFYQGRA 120 PNGQKSDWIM HEYRLETNEN ASPLEEGWVV CRVFKKRVSP AQRTEDHEQP YAYDSQPSFI 180 PEFDPPMRMN SRPPDVPFLR DILHSCKREL ELRNHMPSEH HIRLPRLESS TLTAGIYATG 240 VSFLRNSSPA HEAQIQACIQ QQMISTYNYG STAQQASEQI TDWRVLDKFV ASQLSHGDTS 300 EGDHYPDADI IIQVPEKKEP IADHGSTSSS NSQAGLWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-52	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008812366.1	1e-152	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-121	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2H3ZEN3	1e-151	A0A2H3ZEN3_PHODC; NAC domain-containing protein 7-like
STRING	XP_008812366.1	1e-152	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-111	NAC 007

Link Out ? help Back to Top
Phytozome	Spipo1G0086600

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]