PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0084400
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 461aa    MW: 50809.7 Da    PI: 4.6377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0084400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.2e-5391401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeelv++yLk k++g+++ + evi+evd++k+ePw+Lp +  +++++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++
  Spipo1G0084400   9 LPLGFRFRPTDEELVNHYLKSKINGRTHLV-EVIPEVDVCKFEPWELPdQsVIRTGDPEWFFFAPRDRKYPNGHRSNRATEAGYWKATGKDRTIK 102
                     699************************777.99**************96347778999************************************* PP

             NAM  94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s+   +++++g+kktLvfy+grapkge+t+W+mheyr+
  Spipo1G0084400 103 SRtvaGTANIGMKKTLVFYRGRAPKGERTTWIMHEYRV 140
                     *98888889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-614167IPR003441NAC domain
PROSITE profilePS5100559.1899167IPR003441NAC domain
PfamPF023655.3E-2810140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MATLPLESLP LGFRFRPTDE ELVNHYLKSK INGRTHLVEV IPEVDVCKFE PWELPDQSVI  60
RTGDPEWFFF APRDRKYPNG HRSNRATEAG YWKATGKDRT IKSRTVAGTA NIGMKKTLVF  120
YRGRAPKGER TTWIMHEYRV INSASENDSD GVTGDQDSYV LCRLFKKPDE RGSNPNSEEV  180
EDSSFSPAQT GSSPSHKHHA EDAGEESVAP SNHDLLKSEV QEEPKRPDGV DQWCGDEADS  240
GVRYPVKAED GDNRGGHVAS DLGVHNGEAG AEMDPLLAAL DKLCGSQPEP LDSDGFLRMN  300
SPIYMDDFFS PFPPQFGHGD NNPRAEGEPC FLMAQGGHPA DGAQLCSAST SQRAQLWDSF  360
STKESLSTSD DAGAEMVMVQ NQAQRGRPDA EGSEWFFRSS ISSQNLGDLP LDHLFDHHGQ  420
SPAGIFSMES ATEPLQDAYS FGSFREPASQ DYSDAMRPTR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-50816716165NO APICAL MERISTEM PROTEIN
1ut4_B2e-50816716165NO APICAL MERISTEM PROTEIN
1ut7_A2e-50816716165NO APICAL MERISTEM PROTEIN
1ut7_B2e-50816716165NO APICAL MERISTEM PROTEIN
3swm_A3e-50816719168NAC domain-containing protein 19
3swm_B3e-50816719168NAC domain-containing protein 19
3swm_C3e-50816719168NAC domain-containing protein 19
3swm_D3e-50816719168NAC domain-containing protein 19
3swp_A3e-50816719168NAC domain-containing protein 19
3swp_B3e-50816719168NAC domain-containing protein 19
3swp_C3e-50816719168NAC domain-containing protein 19
3swp_D3e-50816719168NAC domain-containing protein 19
4dul_A2e-50816716165NAC domain-containing protein 19
4dul_B2e-50816716165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020240988.11e-103NAC domain-containing protein 62-like
TrEMBLA0A1D1YBD81e-141A0A1D1YBD8_9ARAE; NAC domain-containing protein 78
TrEMBLA0A1D1ZDK61e-142A0A1D1ZDK6_9ARAE; NAC domain-containing protein 78
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-84NAC transcription factor-like 9