PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0075900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 310aa MW: 34825.5 Da PI: 5.5556

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0075900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.2	2.1e-46	3	129	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 pGfrFhPt+eel+++yLk v+gkkl + vi++ +iy+++Pw+Lp+ +++e +ewyfF++rdk +++g r+nr+t++g+Wkatg+d+++ s Spipo1G0075900 3 LPGFRFHPTEEELLDYYLKGAVQGKKLGE--VIATGNIYRHDPWELPMLARNEGREWYFFVPRDKMNSSGGRPNRTTARGFWKATGTDRPIRSFs 95 59**********************776..9***********88888999********************************9876 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++l gl+ktLvfy+grap+g+ktdWvm+eyrl Spipo1G0075900 96 dQKRLLGLRKTLVFYEGRAPRGRKTDWVMNEYRL 129 67778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.193	2	151	IPR003441	NAC domain
SuperFamily	SSF101941	8.37E-51	3	151	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	4	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MNLPGFRFHP TEEELLDYYL KGAVQGKKLG EVIATGNIYR HDPWELPMLA RNEGREWYFF 60 VPRDKMNSSG GRPNRTTARG FWKATGTDRP IRSFSDQKRL LGLRKTLVFY EGRAPRGRKT 120 DWVMNEYRLA DATDRPSRGK EDVVLCKIYR KAKTIRELKS QVEAMGEEGD CALGTLHPGD 180 ASSAPDASSR RAISLENPAT IALMEGEKAA EAVSVPLRSE PAAITNQVFP PELETLVGSS 240 RLELDWMGNS LLDQLLIPCV DYWSFYLSNV LNFSDDAVLS SQLPKDDVVL DPRILLEPNS 300 KKEEDFVNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-43	1	151	13	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943933.2	1e-84	NAC domain-containing protein 22
Swissprot	Q10S65	5e-73	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A1D1Y9N0	4e-93	A0A1D1Y9N0_9ARAE; Putative NAC domain-containing protein 94
STRING	XP_008781351.1	2e-80	(Phoenix dactylifera)
STRING	GSMUA_Achr7P04030_001	4e-80	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	3e-70	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Spipo1G0075900

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]