PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0052000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 238aa    MW: 27279.5 Da    PI: 5.0397
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0052000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.31.7e-5461331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v 
  Spipo1G0052000   6 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVS 99 
                     79****************************.99**************84335556888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++++g+kktLv+y+grap+g +t+Wvmheyrl
  Spipo1G0052000 100 C-QNRAIGMKKTLVYYRGRAPQGIRTNWVMHEYRL 133
                     *.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-644157IPR003441NAC domain
PROSITE profilePS5100559.5676156IPR003441NAC domain
PfamPF023654.8E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG LKIELDIIPE VDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSC QNRAIGMKKT LVYYRGRAPQ  120
GIRTNWVMHE YRLDDKDSED VVNIQDSYAL CRVFKKNVPI PDVEDQVQCS FPLAENSRGP  180
TNDYDNFSPD LAVGSSSGIE EDDKDNFWMQ FITEDAWCST LSSGEGAYDS PCVTSAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-54115712166NO APICAL MERISTEM PROTEIN
1ut4_B4e-54115712166NO APICAL MERISTEM PROTEIN
1ut7_A4e-54115712166NO APICAL MERISTEM PROTEIN
1ut7_B4e-54115712166NO APICAL MERISTEM PROTEIN
3swm_A4e-54115715169NAC domain-containing protein 19
3swm_B4e-54115715169NAC domain-containing protein 19
3swm_C4e-54115715169NAC domain-containing protein 19
3swm_D4e-54115715169NAC domain-containing protein 19
3swp_A4e-54115715169NAC domain-containing protein 19
3swp_B4e-54115715169NAC domain-containing protein 19
3swp_C4e-54115715169NAC domain-containing protein 19
3swp_D4e-54115715169NAC domain-containing protein 19
4dul_A4e-54115712166NAC domain-containing protein 19
4dul_B4e-54115712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392206.11e-141PREDICTED: NAC domain-containing protein 86
SwissprotA4VCM09e-87NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A1D1Y0321e-153A0A1D1Y032_9ARAE; NAC domain-containing protein 74
STRINGGSMUA_Achr3P13880_0011e-141(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-121NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]