PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0044100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family TCP
Protein Properties Length: 304aa    MW: 30914.4 Da    PI: 10.1326
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0044100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.41.5e-39471483103
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......ka 90 
                     +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a +++a +s  s++n++s+       + 
  Spipo1G0044100  47 TKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPAYFSTATASMRSSQNNQSPtttasspS- 140
                     79******************************************************************88855555555555555534332220. PP

             TCP  91 aksaakskksqks 103
                           s + +++
  Spipo1G0044100 141 -----MSVSLDHK 148
                     .....22222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-3452146IPR005333Transcription factor, TCP
PROSITE profilePS5136928.20952106IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTTPDGGADG AALALTDPGQ RQQQHHQQQG GGRPQQQAAS NGAAAMTKKP PSKDRHSKVD  60
GRGRRIRMPI ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPAYFSTAT  120
ASMRSSQNNQ SPTTTASSPS MSVSLDHKSG GGPGSHNSQG HHIPQALALP FILGKRLRTD  180
EESENGAKDD GAGMSGGGAG GGGAVGVGVG MGIGPGGGFW ALPTRSSEYG HMWSLATPEM  240
VVPPSAATAA SVAGRFAAVQ PIGEASAARV GNYMPMGQGH LNLLASLSGA PAAAGGRREE  300
EQR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748355e-57AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020682551.14e-93transcription factor TCP7
SwissprotQ9FMX22e-69TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2D3E4V98e-92A0A2D3E4V9_CYMEN; TCP7-like protein
TrEMBLA0A2D3E5268e-92A0A2D3E526_9ASPA; TCP-like protein
TrEMBLA0A2I0WDK52e-91A0A2I0WDK5_9ASPA; Transcription factor TCP7
STRINGSolyc04g009180.1.12e-82(Solanum lycopersicum)
STRINGXP_010249637.19e-83(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.14e-51TCP family protein