PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0044100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | TCP | ||||||||
Protein Properties | Length: 304aa MW: 30914.4 Da PI: 10.1326 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.4 | 1.5e-39 | 47 | 148 | 3 | 103 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......ka 90 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a +++a +s s++n++s+ + Spipo1G0044100 47 TKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPAYFSTATASMRSSQNNQSPtttasspS- 140 79******************************************************************88855555555555555534332220. PP TCP 91 aksaakskksqks 103 s + +++ Spipo1G0044100 141 -----MSVSLDHK 148 .....22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.8E-34 | 52 | 146 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 52 | 106 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MTTPDGGADG AALALTDPGQ RQQQHHQQQG GGRPQQQAAS NGAAAMTKKP PSKDRHSKVD 60 GRGRRIRMPI ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPAYFSTAT 120 ASMRSSQNNQ SPTTTASSPS MSVSLDHKSG GGPGSHNSQG HHIPQALALP FILGKRLRTD 180 EESENGAKDD GAGMSGGGAG GGGAVGVGVG MGIGPGGGFW ALPTRSSEYG HMWSLATPEM 240 VVPPSAATAA SVAGRFAAVQ PIGEASAARV GNYMPMGQGH LNLLASLSGA PAAAGGRREE 300 EQR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374835 | 5e-57 | AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020682551.1 | 4e-93 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-69 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2D3E4V9 | 8e-92 | A0A2D3E4V9_CYMEN; TCP7-like protein | ||||
TrEMBL | A0A2D3E526 | 8e-92 | A0A2D3E526_9ASPA; TCP-like protein | ||||
TrEMBL | A0A2I0WDK5 | 2e-91 | A0A2I0WDK5_9ASPA; Transcription factor TCP7 | ||||
STRING | Solyc04g009180.1.1 | 2e-82 | (Solanum lycopersicum) | ||||
STRING | XP_010249637.1 | 9e-83 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 4e-51 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0044100 |