PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo1G0039700

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Dof

Protein Properties

Length: 255aa MW: 27263.5 Da PI: 8.0408

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo1G0039700	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.9	1.5e-35	26	82	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + l+cprC+s+ntkfCyynnys sqPryfCkaCrryWtkGGalrnvPvGg rk k+ Spipo1G0039700 26 GQPLRCPRCNSANTKFCYYNNYSRSQPRYFCKACRRYWTKGGALRNVPVGGR-RKAKR 82 67899********************************************975.55554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.2E-31	28	81	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-21	29	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.233	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSKIGGEAFQ EIGRGKMQQR PQSQQGQPLR CPRCNSANTK FCYYNNYSRS QPRYFCKACR 60 RYWTKGGALR NVPVGGRRKA KRVQGSRPRL SLSNSAPDNA ASEGNTTPAS SPSPFGTDLL 120 FLSNGDLLGE LLPLPSPLPQ FSMISSQSVD DGGGHSPFTS PQSLPLFNSA GQNDLPGVDA 180 GMMAFTGSPA PWELLPSFPC HGGAITTSSG LGATEPSPSS SYWDSCWDDL VGFLLPDHED 240 RPPLPQPSPD ILLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	GRRKAKRVQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1D1XWV9	1e-46	A0A1D1XWV9_9ARAE; Dof zinc finger protein DOF4.6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21340.1	5e-29	Dof family protein

Link Out ? help Back to Top
Phytozome	Spipo1G0039700