PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo1G0035900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 674aa MW: 74779.3 Da PI: 7.9126 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.1 | 1.3e-20 | 70 | 116 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEdell++av+q+ g++Wk+Ia+ ++ gRt+ qc +rwqk+l Spipo1G0035900 70 KGGWTEEEDELLARAVRQFKGKNWKKIAELFP-GRTDVQCLHRWQKVL 116 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.5 | 7.6e-19 | 122 | 168 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde ++++v+++G + W+tIa++m gR +kqc++rw+++l Spipo1G0035900 122 KGAWTKEEDECIIKLVNKYGAKKWATIANKMT-GRIGKQCRERWHNHL 168 79*****************************9.*************97 PP | |||||||
3 | Myb_DNA-binding | 50.9 | 3.5e-16 | 175 | 216 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WTteE+ +l++a+ ++G++ W+ Ia+ ++ gR ++++k++w+ Spipo1G0035900 175 CAWTTEEEIILIRAHGMYGNK-WAEIAKLLP-GRADNSIKNHWN 216 68*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.116 | 65 | 116 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-16 | 67 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-17 | 69 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-18 | 70 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 72 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.25E-15 | 73 | 116 | No hit | No description |
PROSITE profile | PS51294 | 31.2 | 117 | 172 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.11E-31 | 119 | 215 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-17 | 121 | 170 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-17 | 122 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.93E-15 | 124 | 168 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-24 | 133 | 175 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.986 | 173 | 223 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-14 | 173 | 221 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 174 | 216 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-21 | 176 | 223 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.23E-11 | 176 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 674 aa Download sequence Send to blast |
MIVKGIQGEP EDKREVEATK EEEVDVDDKT VEESARDPSS TISDSSCQSS LAKPSPVPGR 60 IRGPARRSTK GGWTEEEDEL LARAVRQFKG KNWKKIAELF PGRTDVQCLH RWQKVLDPEL 120 VKGAWTKEED ECIIKLVNKY GAKKWATIAN KMTGRIGKQC RERWHNHLNP AIKKCAWTTE 180 EEIILIRAHG MYGNKWAEIA KLLPGRADNS IKNHWNCSVK KKLDSYLSSG LLDSSNKNGA 240 LDLNSGLSVR GQPHDLVTQQ ASMELDEKST TAKAFNASSP NLPRENESSR NPRENSDYCK 300 TIAQPLSMEI PRSSRGIPDY IKAFADKNLD ATSPTGRCLT YLASGEDSNH ATARDYGTSF 360 CCKNDYSHRT TSNAILPVTT QPNPSAQMAI HGFITKELFA SPEKSERHAK SMDNLDAPRT 420 SSKLSEHHTP AILENTPMDV ENAADSNETP CTPVPVDMEV LDHDRYVPSQ SSGLHKNIRK 480 FRILESDKPS SEFGSPNFYY GSPRSSRATS VKFWDPEAIL RNAAMTFRKT PSIISKGRQN 540 NSGSSPTTTP CKTAVDSTPR AESVASSMAH AYLHQYEIEM PVDQKSNDAQ HVRQLFPSSS 600 APSKSRIRGA VESVEKRPLE HTSDGEWNDT DTSHSPAFDV GKHIKNPKNS QDQPGSLGRS 660 FSNRTHETIA TYD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-65 | 73 | 223 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-65 | 73 | 223 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D1XHT2 | 0.0 | A0A1D1XHT2_9ARAE; Myb-related protein 3R-1 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-84 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo1G0035900 |