PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0027200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 33149.5 Da PI: 8.4677 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.5 | 1.2e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl Spipo1G0027200 14 KGPWSPEEDAKLKDHIEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.1 | 9.6e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ +++ + G++ W+ Ia+ ++ gRt++++k++w++ Spipo1G0027200 69 GDFTEEEDAIICNLFSRIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.407 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.56E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.41E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.403 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.65E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDHIE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTEEEDAIIC NLFSRIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKIMGI 120 PTPQRKMQPE KHQRQLLPSS SDAMISLATS SIGSRFSSQR TLLPGPDAFG PVTAAGALLH 180 VLNDDHYQVK DSSSSLLVFG GVQSCSSSDG SSDKINYGRA AEYELGLETL LYGGVLEDHP 240 KLFPGGGSRV ERESGVWGEA PIDYTLEEIK QLITTGSACS NLFMGDPTGA IGGGGNARGS 300 GLVSYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 14 | 117 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006381399.2 | 8e-99 | transcription factor RAX2 | ||||
TrEMBL | A0A1D1ZFP5 | 1e-136 | A0A1D1ZFP5_9ARAE; Transcription factor RAX2 | ||||
STRING | POPTR_0006s12530.1 | 9e-98 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 1e-76 | myb domain protein 68 |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0027200 |