PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0019700
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 475aa    MW: 50973.4 Da    PI: 4.3239
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0019700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.56.5e-54211481128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yLk+kv g+++++ ++i+e+d+yk+ePwdLp k +++++++ewyfFs  d+kya+ +r+nrat +gyWk+tgkd+++ 
  Spipo1G0019700  21 LAPGFRFHPTDEELVGYYLKRKVLGRPFRV-DAISEIDLYKTEPWDLPgKsRIQSRDTEWYFFSALDRKYANRSRTNRATGAGYWKTTGKDRAIS 114
                     579***************************.99**************96358899999************************************9 PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +  g+++g+kktLvf+ grapkg +t+Wvmheyrl
  Spipo1G0019700 115 R-AGRTIGMKKTLVFHAGRAPKGARTNWVMHEYRL 148
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-6220171IPR003441NAC domain
PROSITE profilePS5100559.02721171IPR003441NAC domain
PfamPF023653.0E-2823148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSGSSSGSPS PAAPAEGGGA LAPGFRFHPT DEELVGYYLK RKVLGRPFRV DAISEIDLYK  60
TEPWDLPGKS RIQSRDTEWY FFSALDRKYA NRSRTNRATG AGYWKTTGKD RAISRAGRTI  120
GMKKTLVFHA GRAPKGARTN WVMHEYRLHD AHLPAAAVPQ DGFVVCRIFQ KRGPGPQNGA  180
QYGAPLPVED EWDECELPAI KEECGAEGSL SIGFSNPLPD GIADDDDDDP DADQGVEDRK  240
PALALLVRTP GHGGDPNDCQ EQELSNVVDG GTEGHELQEG DHNLAAPGAS YADAADQWRS  300
HAVLKDGYLE LDDFADSAVA NSRENAAAHP GEIIHNYEDS RQEDLNDVKE YFALNDENDD  360
LSEHFSETGG GRRFLELGDL AGSEPHGSSS GEPADDGLVY FDATSHYPHG DHGFSSGMNC  420
FLDAAMGGEN GPDLMDEIMA YFDATENLQP SDLGIGSGAS SSNQPCLAPA VGQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-512017216166NO APICAL MERISTEM PROTEIN
1ut4_B3e-512017216166NO APICAL MERISTEM PROTEIN
1ut7_A3e-512017216166NO APICAL MERISTEM PROTEIN
1ut7_B3e-512017216166NO APICAL MERISTEM PROTEIN
3swm_A4e-512017219169NAC domain-containing protein 19
3swm_B4e-512017219169NAC domain-containing protein 19
3swm_C4e-512017219169NAC domain-containing protein 19
3swm_D4e-512017219169NAC domain-containing protein 19
3swp_A4e-512017219169NAC domain-containing protein 19
3swp_B4e-512017219169NAC domain-containing protein 19
3swp_C4e-512017219169NAC domain-containing protein 19
3swp_D4e-512017219169NAC domain-containing protein 19
4dul_A3e-512017216166NAC domain-containing protein 19
4dul_B3e-512017216166NAC domain-containing protein 19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D1XF851e-112A0A1D1XF85_9ARAE; NAC domain-containing protein 78 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.17e-84NAC domain containing protein 2