PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo1G0002900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 834aa MW: 91718.6 Da PI: 5.8598 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 23 | 81 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Spipo1G0002900 23 KYVRYTTEQVEALERVYAECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81 5679*****************************************************97 PP | |||||||
2 | START | 155.8 | 3.5e-49 | 161 | 368 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ ++ s++ +g a+ra+g+v +++ +e+l+d++ W ++++k e+ g g ++l Spipo1G0002900 161 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSIGMVAISHSNRGVAARACGLVNLEPT-KIAEILKDRPSWFRDCRKLEVFTMFPAGngGMIELV 254 7899******************************************************.7777777777*************9999999****** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++++a+++++p Rdf+++Ry+ +l++g++v++++S++ p +++vRae+lpSg+li+p+++g s v++v+h dl+ ++++++lr+l+ Spipo1G0002900 255 YMQMYAPTTIAPaRDFWTLRYTTTLEDGSLVVCERSLSGSGGGPCastAHQFVRAEMLPSGFLIRPCDEGSSIVHIVDHLDLEPWSVPEVLRPLY 349 **************************************999999888899********************************************* PP HHHHHHHHHHHHHHTXXXX CS START 186 ksglaegaktwvatlqrqc 204 +s+ + ++k+++a+l++ + Spipo1G0002900 350 ESSKVVAQKMTTAALHHIR 368 ***************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.758 | 18 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-15 | 20 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.07E-16 | 23 | 83 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-16 | 23 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.3E-16 | 24 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-18 | 25 | 81 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.69E-6 | 75 | 114 | No hit | No description |
PROSITE profile | PS50848 | 26.539 | 151 | 379 | IPR002913 | START domain |
CDD | cd08875 | 6.31E-71 | 155 | 371 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.2E-21 | 158 | 346 | IPR023393 | START-like domain |
SMART | SM00234 | 3.1E-37 | 160 | 370 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.04E-35 | 160 | 372 | No hit | No description |
Pfam | PF01852 | 7.7E-47 | 161 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 1.1E-47 | 690 | 832 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MAATVTLRNG GGVGLDKQMD NGKYVRYTTE QVEALERVYA ECPKPSSMRR QQLIRECPIL 60 SNIEPKQIKV WFQNRRCREK QRKETSRLQT VNRKLTAMNK LLMEENDRLQ KQVSRLVHEN 120 AYMRQQLQNA SLNTDTSCES AITTPQHSLK DTSDPAGLQS IAEETLAEFL SKATGTAVDW 180 VQMPGMKPGP DSIGMVAISH SNRGVAARAC GLVNLEPTKI AEILKDRPSW FRDCRKLEVF 240 TMFPAGNGGM IELVYMQMYA PTTIAPARDF WTLRYTTTLE DGSLVVCERS LSGSGGGPCA 300 STAHQFVRAE MLPSGFLIRP CDEGSSIVHI VDHLDLEPWS VPEVLRPLYE SSKVVAQKMT 360 TAALHHIRQI AKETSGEVVY ALGRQPAVLR AFSQRLGRGF NDAINGFVDD GWSLMACDGA 420 EDVVTATKSI KNSSAYINSS GDFPTSGGIL CAKASMLLQN VPPGLLFRFL REHRSEWADY 480 NVDAFTAASL KNGSCSFPGL RPIKFSGNQV IMPLAHTVED EEFLEIIKLE GHTQDDCAVS 540 QDVHLLQVCS GMDEKAIGAC CQLVFAPIDE LFPDDAPLLP SGFRVIPLDV KNDGSSSTRT 600 LDLASILEDG SASRAARDAP AAADSVRSIL LIAFQFPYEE HLQESVAAMA RQYVRGIVSS 660 VQRISMAISS SWLGSHPPQK LTPGSPEALT LAHWICRSYS FRTGVDLLGS GGEMGESLLK 720 MLWHHEDAIL CCSLKAMPVF TFANQAGLDM LETTLVALQD ITLDWIFDEP GRRALRSEFT 780 ELMQQGYASL PGGECTSSMG RRVSFERAVA WKVLAEDGTE HCLAFSFISW SFL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920419.1 | 0.0 | homeobox-leucine zipper protein HOX9 isoform X1 | ||||
Refseq | XP_019705716.1 | 0.0 | homeobox-leucine zipper protein HOX9 isoform X1 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A1D1ZGV4 | 0.0 | A0A1D1ZGV4_9ARAE; Homeobox-leucine zipper protein HOX9 | ||||
STRING | XP_008791541.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo1G0002900 |