PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo1G0002900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family HD-ZIP
Protein Properties Length: 834aa    MW: 91718.6 Da    PI: 5.8598
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo1G0002900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182381357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Spipo1G0002900 23 KYVRYTTEQVEALERVYAECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 81
                    5679*****************************************************97 PP

2START155.83.5e-491613682204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++  ++ s++ +g a+ra+g+v  +++   +e+l+d++ W ++++k e+      g  g ++l 
  Spipo1G0002900 161 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSIGMVAISHSNRGVAARACGLVNLEPT-KIAEILKDRPSWFRDCRKLEVFTMFPAGngGMIELV 254
                     7899******************************************************.7777777777*************9999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++++p Rdf+++Ry+ +l++g++v++++S++     p     +++vRae+lpSg+li+p+++g s v++v+h dl+ ++++++lr+l+
  Spipo1G0002900 255 YMQMYAPTTIAPaRDFWTLRYTTTLEDGSLVVCERSLSGSGGGPCastAHQFVRAEMLPSGFLIRPCDEGSSIVHIVDHLDLEPWSVPEVLRPLY 349
                     **************************************999999888899********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k+++a+l++ +
  Spipo1G0002900 350 ESSKVVAQKMTTAALHHIR 368
                     ***************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7581882IPR001356Homeobox domain
SMARTSM003893.9E-152086IPR001356Homeobox domain
CDDcd000862.07E-162383No hitNo description
SuperFamilySSF466895.99E-162385IPR009057Homeodomain-like
PfamPF000465.3E-162481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182581IPR009057Homeodomain-like
CDDcd146861.69E-675114No hitNo description
PROSITE profilePS5084826.539151379IPR002913START domain
CDDcd088756.31E-71155371No hitNo description
Gene3DG3DSA:3.30.530.203.2E-21158346IPR023393START-like domain
SMARTSM002343.1E-37160370IPR002913START domain
SuperFamilySSF559616.04E-35160372No hitNo description
PfamPF018527.7E-47161368IPR002913START domain
PfamPF086701.1E-47690832IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MAATVTLRNG GGVGLDKQMD NGKYVRYTTE QVEALERVYA ECPKPSSMRR QQLIRECPIL  60
SNIEPKQIKV WFQNRRCREK QRKETSRLQT VNRKLTAMNK LLMEENDRLQ KQVSRLVHEN  120
AYMRQQLQNA SLNTDTSCES AITTPQHSLK DTSDPAGLQS IAEETLAEFL SKATGTAVDW  180
VQMPGMKPGP DSIGMVAISH SNRGVAARAC GLVNLEPTKI AEILKDRPSW FRDCRKLEVF  240
TMFPAGNGGM IELVYMQMYA PTTIAPARDF WTLRYTTTLE DGSLVVCERS LSGSGGGPCA  300
STAHQFVRAE MLPSGFLIRP CDEGSSIVHI VDHLDLEPWS VPEVLRPLYE SSKVVAQKMT  360
TAALHHIRQI AKETSGEVVY ALGRQPAVLR AFSQRLGRGF NDAINGFVDD GWSLMACDGA  420
EDVVTATKSI KNSSAYINSS GDFPTSGGIL CAKASMLLQN VPPGLLFRFL REHRSEWADY  480
NVDAFTAASL KNGSCSFPGL RPIKFSGNQV IMPLAHTVED EEFLEIIKLE GHTQDDCAVS  540
QDVHLLQVCS GMDEKAIGAC CQLVFAPIDE LFPDDAPLLP SGFRVIPLDV KNDGSSSTRT  600
LDLASILEDG SASRAARDAP AAADSVRSIL LIAFQFPYEE HLQESVAAMA RQYVRGIVSS  660
VQRISMAISS SWLGSHPPQK LTPGSPEALT LAHWICRSYS FRTGVDLLGS GGEMGESLLK  720
MLWHHEDAIL CCSLKAMPVF TFANQAGLDM LETTLVALQD ITLDWIFDEP GRRALRSEFT  780
ELMQQGYASL PGGECTSSMG RRVSFERAVA WKVLAEDGTE HCLAFSFISW SFL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920419.10.0homeobox-leucine zipper protein HOX9 isoform X1
RefseqXP_019705716.10.0homeobox-leucine zipper protein HOX9 isoform X1
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A1D1ZGV40.0A0A1D1ZGV4_9ARAE; Homeobox-leucine zipper protein HOX9
STRINGXP_008791541.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein