PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo19G0027900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 229aa MW: 25910.3 Da PI: 8.2914 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l++++ +G g+W++ ++ g+ R++k+c++rw +yl Spipo19G0027900 13 KGAWSKQEDEKLINYIYSYGEGCWRSLPKAAGLLRCGKSCRLRWINYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Spipo19G0027900 66 RGKFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 899*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.789 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.3E-27 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-9 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.501 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-10 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MRKPCCEDQH INKGAWSKQE DEKLINYIYS YGEGCWRSLP KAAGLLRCGK SCRLRWINYL 60 RPDLKRGKFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRKRVTEMGV 120 DWRNSRQTDK SPFHSSKWSQ SSGVKLSPST MSLHRCNGCT PSSNHSHAGE VWISDEASSV 180 EDDSPLLPDL NLDLNLSSTF PFHGLAGQTL REMKEVGDGL PPTLLQFI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-28 | 11 | 115 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093406.2 | 8e-87 | transcription factor MYB8 | ||||
Swissprot | P81393 | 3e-73 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A1U8B1P1 | 7e-85 | A0A1U8B1P1_NELNU; transcription repressor MYB6-like | ||||
STRING | XP_010274638.1 | 1e-85 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-71 | myb domain protein 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo19G0027900 |
Publications ? help Back to Top | |||
---|---|---|---|
|