PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0010900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 517aa    MW: 58324.2 Da    PI: 7.3272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0010900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.5e-50191461128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +ppGf FhPtd el+++yLk+k+ g +++l evi+evdiyk+ePwdLp k  + +++++w+fF++rdkky++g+r+nrat++gyWk+tgkd+++
  Spipo19G0010900  19 MPPGFGFHPTDVELISHYLKRKILGCQIDL-EVIPEVDIYKYEPWDLPaKsLIPTRDSKWHFFTSRDKKYPNGSRSNRATAAGYWKSTGKDRNI 111
                      79****************************.99***************5345667999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ +g+kktLvf++gr p g++t+W+mhey l
  Spipo19G0010900 112 RL-NNRIIGTKKTLVFHQGRPPYGKRTEWIMHEYYL 146
                      **.999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-5612168IPR003441NAC domain
PROSITE profilePS5100555.60619168IPR003441NAC domain
PfamPF023651.1E-2420145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MIREGKRKSR METSYAFSMP PGFGFHPTDV ELISHYLKRK ILGCQIDLEV IPEVDIYKYE  60
PWDLPAKSLI PTRDSKWHFF TSRDKKYPNG SRSNRATAAG YWKSTGKDRN IRLNNRIIGT  120
KKTLVFHQGR PPYGKRTEWI MHEYYLNEKE YSAAPIKDIF VLCRVTKRKG SNQEEEELVL  180
PPVKKCINPC LSLPKKNCSK ELEDIFVHLI PKKEASSPTE EVDDYESWLA ELYDPNISTT  240
LLLSEPANEQ KVDGDSLALM NDLDKKCSHG VDETNVSPPE DHGSHNFHGY NSDPHELDCD  300
LFLLGGESGP AVFDAVCDYQ NGSELGVGYN PYLDYEDKWA EDSLVRELLS PSSVFLNGHG  360
GMIAEDYAES VVSFAGGNQD TGIQIRERQN PPREVLSQRI RFQVHNSTKS GPVDQTFVFV  420
SEDGRLEPTS ELVIKDSTAP RTKLTKSGRR AKLLHKSRDC LRKARGFVRN IGSSLRRSSL  480
VGLNCLIVVA RMLGAALLVA FFLVREALRF LCPTCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-4751692169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ7GCL76e-79NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLA0A1D1YRE61e-134A0A1D1YRE6_9ARAE; NAC domain-containing protein 74
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.18e-66NAC domain containing protein 86
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]