PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo19G0008000

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

G2-like

Protein Properties

Length: 421aa MW: 46749.2 Da PI: 7.8586

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo19G0008000	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.4	2.4e-11	93	116	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 prlrWtp+LH +Fv+ave+LGG+ Spipo19G0008000 93 PRLRWTPDLHMSFVHAVERLGGQA 116 8*********************84 PP
2	G2-like	49.5	9.5e-16	140	171	24	55
G2-like 24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55 + +AtPk +l++m+v gL+++hvkSHLQ+YR+ Spipo19G0008000 140 PSRATPKLVLQMMNVRGLSIAHVKSHLQMYRS 171 579****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-27	89	172	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-10	91	117	IPR009057	Homeodomain-like
Pfam	PF00249	2.7E-6	94	170	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.8E-10	141	173	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.48E-10	144	172	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MGGAEVVEIH DDGGGGREKA PSPAHSGKRP ALDLNEDAGE GSEEEEDEED GGSTTEVAGG 60 GSSSNNSSSN NIAGEGSSER TSSVRQYNRS KMPRLRWTPD LHMSFVHAVE RLGGQASEFS 120 QNSTPRTSEK IERKINEIEP SRATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLEDPAQD 180 KFSVSSGIHM QRGDRIPDLI YQRTGACQAF KMDSSGSLFA SRSHLEPGGM CGLIQRPPSQ 240 QALDLKNYAL SRHQEWPFHQ QITARVTSSL NHGRAKDLIQ DIIHRQEMKP STSHLFDVRD 300 AITNNNSRPL SLHQVLEDMR SQQGEVRGGL LMERKRAPDN FHWGGSISQS LIPRKHMEMN 360 KPVLKSEDPM GRKENIESES KKMKMTPDKG RSLHPNLQLS LCPSSIANQK KDLEEHRSEQ 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MGGAEVVEIH DDGGGGREKA PSPAHSGKRP ALDLNEDAGE GSEEEEDEED GGSTTEVAGG  60
GSSSNNSSSN NIAGEGSSER TSSVRQYNRS KMPRLRWTPD LHMSFVHAVE RLGGQASEFS  120
QNSTPRTSEK IERKINEIEP SRATPKLVLQ MMNVRGLSIA HVKSHLQMYR SKKLEDPAQD  180
KFSVSSGIHM QRGDRIPDLI YQRTGACQAF KMDSSGSLFA SRSHLEPGGM CGLIQRPPSQ  240
QALDLKNYAL SRHQEWPFHQ QITARVTSSL NHGRAKDLIQ DIIHRQEMKP STSHLFDVRD  300
AITNNNSRPL SLHQVLEDMR SQQGEVRGGL LMERKRAPDN FHWGGSISQS LIPRKHMEMN  360
KPVLKSEDPM GRKENIESES KKMKMTPDKG RSLHPNLQLS LCPSSIANQK KDLEEHRSEQ  420
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915504.1	7e-86	two-component response regulator ARR18 isoform X2
TrEMBL	A0A1D1XLY8	7e-95	A0A1D1XLY8_9ARAE; Putative Myb family transcription factor At1g14600
STRING	XP_008790063.1	4e-80	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2754	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	6e-31	G2-like family protein

Link Out ? help Back to Top
Phytozome	Spipo19G0008000