PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo18G0038100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | MYB_related | ||||||||
Protein Properties | Length: 100aa MW: 11240.4 Da PI: 9.606 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.9e-10 | 5 | 50 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ +++ +a + + ++ +W ++ar++g g+++ ++k ++ Spipo18G0038100 5 SPWTAKQNKQFERALAVYDKDtpdRWQKVAREVG-GKSPDEVKRHYD 50 58********************************.**********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.771 | 1 | 53 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.4E-8 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.8E-13 | 5 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 6 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.90E-7 | 6 | 49 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 7 | 50 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MASSSPWTAK QNKQFERALA VYDKDTPDRW QKVAREVGGK SPDEVKRHYD DLIDDLRCIE 60 SGRVPVPNYR SSASRSGGGG GGGRERLDEE QRFRHLKLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-34 | 3 | 98 | 7 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003545280.1 | 4e-41 | protein RADIALIS-like 4 isoform X1 | ||||
Refseq | XP_028198407.1 | 4e-41 | protein RADIALIS-like 4 isoform X1 | ||||
Swissprot | Q58FS3 | 2e-34 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A445H2R2 | 9e-40 | A0A445H2R2_GLYSO; Protein RADIALIS-like 1 isoform A | ||||
TrEMBL | K7M5F6 | 9e-40 | K7M5F6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA14G08101.1 | 2e-40 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 2e-34 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Spipo18G0038100 |
Publications ? help Back to Top | |||
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