PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo18G0015900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

Nin-like

Protein Properties

Length: 243aa MW: 27313.6 Da PI: 9.1335

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo18G0015900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.7	1.8e-26	118	168	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++ +ed+sk+F++pi++AAk + v+lTvLK++CR++GI+RWPhRk+ksl Spipo18G0015900 118 TSSMAFEDISKFFYMPITEAAKAMRVGLTVLKKRCRELGISRWPHRKMKSL 168 67899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.848	104	188	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-21	121	168	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MATFFQCCCS HLPLCGGHLC QSPSIYPPII LPLAEAPPQD LYLPPDQLST AMDFDFNFNL 60 DSIALEDAAL LDFRVETPPA APPHHQHQHH QRHQSAAARH PGEGSGGLRQ AAPARPRTSS 120 MAFEDISKFF YMPITEAAKA MRVGLTVLKK RCRELGISRW PHRKMKSLTS LIHNVQELGK 180 GAAMEDSVRR EIETLEEHKR LLEMMPEMQL TERTKKLRQA CFKANFKKRR ASQLPSPRSL 240 SI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9M9U9	7e-39	RKD1_ARATH; Protein RKD1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-41	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Spipo18G0015900