PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo17G0034500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 250aa    MW: 28437 Da    PI: 7.7714
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo17G0034500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.81.7e-5651321128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv +yL++k++g ++el evi+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v
  Spipo17G0034500   5 LPPGFRFHPTDEELVYYYLRRKINGLQIEL-EVIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRKV 97 
                      79****************************.99**************95334455777************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++vg+kktLv+y grap+g++tdWvmheyrl
  Spipo17G0034500  98 SY-QRRAVGMKKTLVYYMGRAPHGSRTDWVMHEYRL 132
                      *9.8999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-643155IPR003441NAC domain
PROSITE profilePS5100560.9355155IPR003441NAC domain
PfamPF023654.0E-306132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAPVLPPGFR FHPTDEELVY YYLRRKINGL QIELEVIPEV DLYKCEPWDL PEKSFLPSKD  60
LEWYFFSPRD RKYPNGSRTN RATRAGYWKA TGKDRKVSYQ RRAVGMKKTL VYYMGRAPHG  120
SRTDWVMHEY RLDERECEAA NGVQDAYALC RVFKKSAPGP KIMEHYGATY DGHLQWASGE  180
HCSAATTSCD ERADDLESCG FQALPTRPCA AAATRAETDA RDDGSWMQFL SDEALASSSF  240
AFVPSKSKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-58516117171NO APICAL MERISTEM PROTEIN
1ut4_B3e-58516117171NO APICAL MERISTEM PROTEIN
1ut7_A3e-58516117171NO APICAL MERISTEM PROTEIN
1ut7_B3e-58516117171NO APICAL MERISTEM PROTEIN
3swm_A4e-58516120174NAC domain-containing protein 19
3swm_B4e-58516120174NAC domain-containing protein 19
3swm_C4e-58516120174NAC domain-containing protein 19
3swm_D4e-58516120174NAC domain-containing protein 19
3swp_A4e-58516120174NAC domain-containing protein 19
3swp_B4e-58516120174NAC domain-containing protein 19
3swp_C4e-58516120174NAC domain-containing protein 19
3swp_D4e-58516120174NAC domain-containing protein 19
4dul_A3e-58516117171NAC domain-containing protein 19
4dul_B3e-58516117171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083656.11e-127NAC domain-containing protein 86-like isoform X1
RefseqXP_020083657.11e-128NAC domain-containing protein 86-like isoform X2
RefseqXP_020248886.11e-128NAC domain-containing protein 86-like isoform X1
RefseqXP_020248888.11e-129NAC domain-containing protein 86-like isoform X2
SwissprotA4VCM04e-94NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A2H3X4N51e-124A0A2H3X4N5_PHODC; NAC domain-containing protein 86-like
TrEMBLA0A2I0VCI81e-123A0A2I0VCI8_9ASPA; NAC domain-containing protein 78
STRINGXP_008778272.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-101NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]