PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Spipo16G0055200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 701aa MW: 75473.9 Da PI: 7.1481 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.2 | 3.6e-24 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++++ t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF ++ Spipo16G0055200 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPAQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RT 215 89*****************************96545444..8************************************************..45 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ el+v+++r+ Spipo16G0055200 216 ERDELCVGIRRA 227 78888****997 PP | |||||||
2 | Auxin_resp | 112 | 5.8e-37 | 298 | 381 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++++FevvY+Prast+eF+v++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +d vrWp+S+Wr L+ Spipo16G0055200 298 AVTLAANGQPFEVVYYPRASTPEFCVRAGAVKAALRINWCSGMRFKMAFETEDSSRISWfMGTISSVQYVDAVRWPDSPWRILQ 381 67899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-38 | 118 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.82E-23 | 124 | 226 | No hit | No description |
SuperFamily | SSF101936 | 1.1E-29 | 125 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.084 | 126 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-22 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-22 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-32 | 298 | 381 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 13.268 | 613 | 691 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 701 aa Download sequence Send to blast |
MIVPSLSRAS REAMKRADKC LDSQLWHACA GGMVNMPTLN SLVYYFPQGH AEHSQGIVDF 60 GRCPRIPPYL LCRVFSIDYM ADEETDEVFA RMKLVPAGAD ELDYCRESVG LQDSNGSDLA 120 EKPPSFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPAQTVLAKD VHGEVWKFRH 180 IYRGTPRRHL LTTGWSSFVN QKKLVAGDSI VFLRTERDEL CVGIRRAKRR IGSELETPSG 240 WNTPSAICLP PPPGGFSLFS REDESKLPMR SNGCGGSPGS GRSATAKGGL TPDAVIKAVT 300 LAANGQPFEV VYYPRASTPE FCVRAGAVKA ALRINWCSGM RFKMAFETED SSRISWFMGT 360 ISSVQYVDAV RWPDSPWRIL QVAWDEPDLL QNVKCVNPWL VELVSSVPAV HLMMPFSPPR 420 KKLCLSQAPP PSFPRDGHVM APLFSGDLLE ACGDHRLCST PDGAPAGIQG ARHAQFGISL 480 SDLCIHKLQS GLLEAGNQPC RLSSMDSIPG NHHPIRDDVT CLLIGNPSSS PGGEPCGAKV 540 PQFLLFGQPI LTEQQISLAC GGEAAAPVSS GKAAELLAAG SGSAVGPEAS SNDESLGCKD 600 GHSAAAGPPG LETGLCKVFL RSEGLARSLD LLALGSYEEL RTRLTDMFGF KTLEIKKHVL 660 YEDATGAVRH TGAEPFSDFA RTARRLQILA SPGGKDGARR * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-77 | 21 | 402 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008791554.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A1D1XFL3 | 0.0 | A0A1D1XFL3_9ARAE; Auxin response factor | ||||
STRING | XP_008791554.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Spipo16G0055200 |
Publications ? help Back to Top | |||
---|---|---|---|
|