PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0055200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family ARF
Protein Properties Length: 701aa    MW: 75473.9 Da    PI: 7.1481
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0055200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.6e-24126227199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++++  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF   ++
  Spipo16G0055200 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPAQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL--RT 215
                      89*****************************96545444..8************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ el+v+++r+
  Spipo16G0055200 216 ERDELCVGIRRA 227
                      78888****997 PP

2Auxin_resp1125.8e-37298381183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++FevvY+Prast+eF+v++  v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +d vrWp+S+Wr L+
  Spipo16G0055200 298 AVTLAANGQPFEVVYYPRASTPEFCVRAGAVKAALRINWCSGMRFKMAFETEDSSRISWfMGTISSVQYVDAVRWPDSPWRILQ 381
                      67899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-38118230IPR015300DNA-binding pseudobarrel domain
CDDcd100173.82E-23124226No hitNo description
SuperFamilySSF1019361.1E-29125251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.084126228IPR003340B3 DNA binding domain
SMARTSM010197.1E-22126228IPR003340B3 DNA binding domain
PfamPF023621.3E-22126227IPR003340B3 DNA binding domain
PfamPF065071.3E-32298381IPR010525Auxin response factor
PROSITE profilePS5174513.268613691IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MIVPSLSRAS REAMKRADKC LDSQLWHACA GGMVNMPTLN SLVYYFPQGH AEHSQGIVDF  60
GRCPRIPPYL LCRVFSIDYM ADEETDEVFA RMKLVPAGAD ELDYCRESVG LQDSNGSDLA  120
EKPPSFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPAQTVLAKD VHGEVWKFRH  180
IYRGTPRRHL LTTGWSSFVN QKKLVAGDSI VFLRTERDEL CVGIRRAKRR IGSELETPSG  240
WNTPSAICLP PPPGGFSLFS REDESKLPMR SNGCGGSPGS GRSATAKGGL TPDAVIKAVT  300
LAANGQPFEV VYYPRASTPE FCVRAGAVKA ALRINWCSGM RFKMAFETED SSRISWFMGT  360
ISSVQYVDAV RWPDSPWRIL QVAWDEPDLL QNVKCVNPWL VELVSSVPAV HLMMPFSPPR  420
KKLCLSQAPP PSFPRDGHVM APLFSGDLLE ACGDHRLCST PDGAPAGIQG ARHAQFGISL  480
SDLCIHKLQS GLLEAGNQPC RLSSMDSIPG NHHPIRDDVT CLLIGNPSSS PGGEPCGAKV  540
PQFLLFGQPI LTEQQISLAC GGEAAAPVSS GKAAELLAAG SGSAVGPEAS SNDESLGCKD  600
GHSAAAGPPG LETGLCKVFL RSEGLARSLD LLALGSYEEL RTRLTDMFGF KTLEIKKHVL  660
YEDATGAVRH TGAEPFSDFA RTARRLQILA SPGGKDGARR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-772140251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791554.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1D1XFL30.0A0A1D1XFL3_9ARAE; Auxin response factor
STRINGXP_008791554.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]