PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Spipo16G0026900

Organism

Spirodela polyrhiza

Taxonomic ID

29656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela

Family

NAC

Protein Properties

Length: 229aa MW: 24694.6 Da PI: 6.5323

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Spipo16G0026900	genome	MIPS/IBIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.9	1e-32	25	121	42	128
NAM 42 vePwdLpk...........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124 + P +L + +++++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v + +++++g+kktLv+y+grap+g++t+Wvmh Spipo16G0026900 25 ISPPELTEryatawlaeksFLTGRDPEWYFFGPRDRKYPNGLRTNRATRAGYWKSTGKDRTVSC-RTRVIGMKKTLVYYRGRAPNGTRTSWVMH 117 55666653344444444333334677************************************.999********************** PP NAM 125 eyrl 128 eyr+ Spipo16G0026900 118 EYRV 121 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.141	1	154	IPR003441	NAC domain
Pfam	PF02365	1.9E-17	29	121	IPR003441	NAC domain
SuperFamily	SSF101941	9.02E-38	46	154	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MNGGRRPPPG PPAAALVVSA AARQISPPEL TERYATAWLA EKSFLTGRDP EWYFFGPRDR 60 KYPNGLRTNR ATRAGYWKST GKDRTVSCRT RVIGMKKTLV YYRGRAPNGT RTSWVMHEYR 120 VHDSEPDDLT GGVLAAPPTI NLSDSYALCR VFKKSAPAAT ENSAGVGVGV GVGDDDCNLS 180 SELLAGTPAG AADEDDAWMQ FISEETWPSS PWAGGEITDD PLSMTPPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-30	38	158	60	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-30	38	158	60	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-30	38	158	60	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-30	38	158	60	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-30	38	158	63	172	NAC domain-containing protein 19
3swm_B	1e-30	38	158	63	172	NAC domain-containing protein 19
3swm_C	1e-30	38	158	63	172	NAC domain-containing protein 19
3swm_D	1e-30	38	158	63	172	NAC domain-containing protein 19
3swp_A	1e-30	38	158	63	172	NAC domain-containing protein 19
3swp_B	1e-30	38	158	63	172	NAC domain-containing protein 19
3swp_C	1e-30	38	158	63	172	NAC domain-containing protein 19
3swp_D	1e-30	38	158	63	172	NAC domain-containing protein 19
4dul_A	1e-30	38	158	60	169	NAC domain-containing protein 19
4dul_B	1e-30	38	158	60	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013452823.1	2e-67	NAC domain-containing protein 86
Swissprot	Q9FFI5	8e-44	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A072UBN5	4e-66	A0A072UBN5_MEDTR; NAC transcription factor-like protein
STRING	EOY19688	4e-65	(Theobroma cacao)
STRING	XP_010037008.1	4e-65	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	2e-58	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Spipo16G0026900

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]