PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo16G0026900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 229aa MW: 24694.6 Da PI: 6.5323 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.9 | 1e-32 | 25 | 121 | 42 | 128 |
NAM 42 vePwdLpk...........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124 + P +L + +++++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v + +++++g+kktLv+y+grap+g++t+Wvmh Spipo16G0026900 25 ISPPELTEryatawlaeksFLTGRDPEWYFFGPRDRKYPNGLRTNRATRAGYWKSTGKDRTVSC-RTRVIGMKKTLVYYRGRAPNGTRTSWVMH 117 55666653344444444333334677**************************************.999************************** PP NAM 125 eyrl 128 eyr+ Spipo16G0026900 118 EYRV 121 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.141 | 1 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-17 | 29 | 121 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.02E-38 | 46 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MNGGRRPPPG PPAAALVVSA AARQISPPEL TERYATAWLA EKSFLTGRDP EWYFFGPRDR 60 KYPNGLRTNR ATRAGYWKST GKDRTVSCRT RVIGMKKTLV YYRGRAPNGT RTSWVMHEYR 120 VHDSEPDDLT GGVLAAPPTI NLSDSYALCR VFKKSAPAAT ENSAGVGVGV GVGDDDCNLS 180 SELLAGTPAG AADEDDAWMQ FISEETWPSS PWAGGEITDD PLSMTPPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-30 | 38 | 158 | 60 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-30 | 38 | 158 | 60 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-30 | 38 | 158 | 60 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-30 | 38 | 158 | 60 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-30 | 38 | 158 | 63 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-30 | 38 | 158 | 63 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-30 | 38 | 158 | 63 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-30 | 38 | 158 | 63 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-30 | 38 | 158 | 63 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-30 | 38 | 158 | 63 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-30 | 38 | 158 | 63 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-30 | 38 | 158 | 63 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-30 | 38 | 158 | 60 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-30 | 38 | 158 | 60 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013452823.1 | 2e-67 | NAC domain-containing protein 86 | ||||
Swissprot | Q9FFI5 | 8e-44 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A072UBN5 | 4e-66 | A0A072UBN5_MEDTR; NAC transcription factor-like protein | ||||
STRING | EOY19688 | 4e-65 | (Theobroma cacao) | ||||
STRING | XP_010037008.1 | 4e-65 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 2e-58 | NAC domain containing protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Spipo16G0026900 |
Publications ? help Back to Top | |||
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