PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo16G0014100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 27440.5 Da PI: 10.8557 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.8e-53 | 1 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +p+GfrF+Ptdeel++++Lk k++g+k + vi+e+d++k+ePwdLp k +k+++kew+fFs+r++ky++g+r+nrat +gyWkatg+d+++ Spipo16G0014100 1 MPVGFRFKPTDEELINHFLKGKIRGRKDND-MVIPEIDVCKFEPWDLPgKsVIKNGDKEWFFFSPRNRKYTNGQRSNRATVAGYWKATGQDRKI 93 699************************666.78***************734788899************************************* PP NAM 93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ + + +g+kktLvf++grapkg+kt+W+mheyrl Spipo16G0014100 94 KSRsssGVNPIGMKKTLVFHRGRAPKGKKTRWLMHEYRL 132 **86655566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.185 | 1 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-54 | 1 | 137 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-27 | 2 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MPVGFRFKPT DEELINHFLK GKIRGRKDND MVIPEIDVCK FEPWDLPGKS VIKNGDKEWF 60 FFSPRNRKYT NGQRSNRATV AGYWKATGQD RKIKSRSSSG VNPIGMKKTL VFHRGRAPKG 120 KKTRWLMHEY RLTSSPDNIV DKGRVDQHEA KKPSKQPCQQ ASGSDDESRR PGTTLRAASP 180 QSEPELRLRR SVSAADERCG GPLRLKEAPK RSHLGFYSMG SAILSLMPVL ALVYVGWRCF 240 GH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-43 | 1 | 132 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-43 | 1 | 132 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-43 | 1 | 132 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-43 | 1 | 132 | 17 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-43 | 1 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swm_B | 6e-43 | 1 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swm_C | 6e-43 | 1 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swm_D | 6e-43 | 1 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swp_A | 6e-43 | 1 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swp_B | 6e-43 | 1 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swp_C | 6e-43 | 1 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3swp_D | 6e-43 | 1 | 132 | 20 | 145 | NAC domain-containing protein 19 |
3ulx_A | 6e-43 | 1 | 132 | 15 | 140 | Stress-induced transcription factor NAC1 |
4dul_A | 5e-43 | 1 | 132 | 17 | 142 | NAC domain-containing protein 19 |
4dul_B | 5e-43 | 1 | 132 | 17 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010241065.1 | 1e-63 | PREDICTED: protein NTM1-like 9 isoform X3 | ||||
Refseq | XP_019056114.1 | 1e-63 | PREDICTED: protein NTM1-like 9 isoform X1 | ||||
Refseq | XP_019056115.1 | 1e-63 | PREDICTED: protein NTM1-like 9 isoform X2 | ||||
Swissprot | B5X570 | 1e-58 | NAC14_ARATH; NAC domain-containing protein 14 | ||||
Swissprot | F4JN35 | 1e-59 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A1D1YBD8 | 3e-65 | A0A1D1YBD8_9ARAE; NAC domain-containing protein 78 | ||||
TrEMBL | A0A1D1Z4A0 | 4e-68 | A0A1D1Z4A0_9ARAE; NAC domain-containing protein 78 (Fragment) | ||||
TrEMBL | A0A1D1ZDK6 | 3e-66 | A0A1D1ZDK6_9ARAE; NAC domain-containing protein 78 | ||||
STRING | cassava4.1_032341m | 1e-64 | (Manihot esculenta) | ||||
STRING | XP_010241065.1 | 4e-63 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.3 | 5e-62 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Spipo16G0014100 |
Publications ? help Back to Top | |||
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