PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo16G0014100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NAC
Protein Properties Length: 243aa    MW: 27440.5 Da    PI: 10.8557
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo16G0014100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.8e-5311321128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +p+GfrF+Ptdeel++++Lk k++g+k +   vi+e+d++k+ePwdLp k  +k+++kew+fFs+r++ky++g+r+nrat +gyWkatg+d+++
  Spipo16G0014100   1 MPVGFRFKPTDEELINHFLKGKIRGRKDND-MVIPEIDVCKFEPWDLPgKsVIKNGDKEWFFFSPRNRKYTNGQRSNRATVAGYWKATGQDRKI 93 
                      699************************666.78***************734788899************************************* PP

              NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s+   + + +g+kktLvf++grapkg+kt+W+mheyrl
  Spipo16G0014100  94 KSRsssGVNPIGMKKTLVFHRGRAPKGKKTRWLMHEYRL 132
                      **86655566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.1851156IPR003441NAC domain
SuperFamilySSF1019412.48E-541137IPR003441NAC domain
PfamPF023654.9E-272132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MPVGFRFKPT DEELINHFLK GKIRGRKDND MVIPEIDVCK FEPWDLPGKS VIKNGDKEWF  60
FFSPRNRKYT NGQRSNRATV AGYWKATGQD RKIKSRSSSG VNPIGMKKTL VFHRGRAPKG  120
KKTRWLMHEY RLTSSPDNIV DKGRVDQHEA KKPSKQPCQQ ASGSDDESRR PGTTLRAASP  180
QSEPELRLRR SVSAADERCG GPLRLKEAPK RSHLGFYSMG SAILSLMPVL ALVYVGWRCF  240
GH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-43113217142NO APICAL MERISTEM PROTEIN
1ut4_B5e-43113217142NO APICAL MERISTEM PROTEIN
1ut7_A5e-43113217142NO APICAL MERISTEM PROTEIN
1ut7_B5e-43113217142NO APICAL MERISTEM PROTEIN
3swm_A6e-43113220145NAC domain-containing protein 19
3swm_B6e-43113220145NAC domain-containing protein 19
3swm_C6e-43113220145NAC domain-containing protein 19
3swm_D6e-43113220145NAC domain-containing protein 19
3swp_A6e-43113220145NAC domain-containing protein 19
3swp_B6e-43113220145NAC domain-containing protein 19
3swp_C6e-43113220145NAC domain-containing protein 19
3swp_D6e-43113220145NAC domain-containing protein 19
3ulx_A6e-43113215140Stress-induced transcription factor NAC1
4dul_A5e-43113217142NAC domain-containing protein 19
4dul_B5e-43113217142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241065.11e-63PREDICTED: protein NTM1-like 9 isoform X3
RefseqXP_019056114.11e-63PREDICTED: protein NTM1-like 9 isoform X1
RefseqXP_019056115.11e-63PREDICTED: protein NTM1-like 9 isoform X2
SwissprotB5X5701e-58NAC14_ARATH; NAC domain-containing protein 14
SwissprotF4JN351e-59NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A1D1YBD83e-65A0A1D1YBD8_9ARAE; NAC domain-containing protein 78
TrEMBLA0A1D1Z4A04e-68A0A1D1Z4A0_9ARAE; NAC domain-containing protein 78 (Fragment)
TrEMBLA0A1D1ZDK63e-66A0A1D1ZDK6_9ARAE; NAC domain-containing protein 78
STRINGcassava4.1_032341m1e-64(Manihot esculenta)
STRINGXP_010241065.14e-63(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.35e-62NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]