PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Spipo16G0008400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
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Family | Dof | ||||||||
Protein Properties | Length: 224aa MW: 24550.5 Da PI: 9.9593 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.7 | 1.4e-39 | 25 | 85 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+ l+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk++s Spipo16G0008400 25 KEQPLSCPRCQSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRHS 85 67899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-28 | 22 | 83 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.2E-34 | 27 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MNPSMEDMAS STRPQLTERR PRPHKEQPLS CPRCQSTNTK FCYYNNYSLS QPRYFCKTCR 60 RYWTEGGSLR NVPVGGGSRK NKRHSTAAPK NTATNPSSSS QSYASSSSRK VSADLLPPQP 120 TRSSSFRNPR FHEEKGPQPA FTPVELLPAQ GLNPFMPVVG ADYTAVFGLQ DFRSAPEVSY 180 PLDAVGGGGV YGSMQGETTL KLSNLLSIDP KQIKSANFNG EIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009397850.1 | 8e-58 | PREDICTED: dof zinc finger protein DOF4.6 isoform X1 | ||||
Refseq | XP_009397851.1 | 7e-58 | PREDICTED: dof zinc finger protein DOF4.6 isoform X2 | ||||
TrEMBL | A0A444CM61 | 9e-57 | A0A444CM61_ENSVE; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P27160_001 | 3e-57 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 4e-38 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Spipo16G0008400 |